| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 35 (0.740) | 185 (8.460) +TTTAATATCAGTAAACCGGACATAACC |
46/48 | NT | 91.5% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 40 (0.840) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 492 total aligned reads displayed.
AGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGC > W3110S.gb/4124435‑4124574 | ctggtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCa > 1:3787384‑M2/70‑71 (MQ=255)aGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCa > 1:2485142/1‑71 (MQ=255) gtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATg < 1:3307812‑M2/4‑1 (MQ=255) gcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATg > 1:1020996‑M2/65‑68 (MQ=255) cagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATgaaga < 1:1664391‑M2/8‑1 (MQ=255) agaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATgaagaa < 1:4431118‑M2/9‑1 (MQ=255) agaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa > 1:2171232‑M2/60‑71 (MQ=255) agaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaa > 1:2096150‑M2/60‑70 (MQ=255) gaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATgaagaa > 1:3856821‑M2/59‑67 (MQ=255) gaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAAt > 1:4027633‑M2/59‑71 (MQ=255) aggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcgc > 1:2773542‑M2/56‑71 (MQ=255) ggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcgcg < 1:1641204‑M2/17‑1 (MQ=255) gcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCgcgc > 1:3597070‑M2/54‑71 (MQ=255) aTGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCtt > 1:1206150/1‑71 (MQ=255) gaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttt < 1:2580648‑M2/21‑1 (MQ=255) gaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATAAAGAAAAATCGCGCttt < 1:89863‑M2/21‑1 (MQ=255) aagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttt < 1:4195265‑M2/22‑1 (MQ=255) agttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcgc > 1:1347935‑M2/49‑64 (MQ=255) agttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttttt > 1:826‑M2/49‑71 (MQ=255) agttgcctctggcgagcataatttaatatcagtaaaccggacataaccCACTTCAAAAAATCGCGCttttt < 1:4131761‑M2/23‑1 (MQ=255) tGTCGGAGCTTTCTCCACAGCCGGAGAAGGTTTAATTAGTTAGTCAGCATgaagaa < 1:915938/56‑1 (MQ=255) gttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttt < 1:432171‑M2/21‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtt < 1:1394239‑M2/20‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:4256813‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:2032876‑M2/25‑1 (MQ=255) tgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:2860137‑M2/25‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:2813891‑M2/45‑69 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:2447787‑M2/45‑69 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:3754269‑M2/45‑69 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:3382774‑M2/26‑1 (MQ=255) cctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa < 1:2609853‑M2/27‑1 (MQ=255) cctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa < 1:2211947‑M2/27‑1 (MQ=255) ctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt < 1:1103113‑M2/24‑1 (MQ=255) aGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTg < 1:2546978/71‑1 (MQ=255) ggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa > 1:2360960‑M2/39‑50 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:1837441‑M2/32‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:3639491‑M2/32‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg > 1:4229894‑M2/38‑69 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa < 1:483412‑M2/34‑1 (MQ=255) tctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc < 1:129426/69‑1 (MQ=255) cgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg < 1:187388‑M2/35‑1 (MQ=255) ctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCa > 1:4219938/1‑37 (MQ=255) agcataatttaatatcagtaaaccggacataaccCATGAAGaaa < 1:1596859‑M2/10‑1 (MQ=255) gcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgggg > 1:1912905‑M2/34‑71 (MQ=255) cataatttaatttcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggggg > 1:1995286‑M2/33‑71 (MQ=255) ataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc < 1:4412974‑M2/33‑1 (MQ=255) taatttaatatcagtaaaccggacataaccCTTGAAGaaa > 1:3243389‑M2/31‑40 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGaaaaa < 1:1265252‑M2/12‑1 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATcgcg < 1:1962653‑M2/17‑1 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggggg < 1:3076737‑M2/39‑1 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCa < 1:2140933‑M2/41‑1 (MQ=255) caGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCa < 1:1441874/71‑1 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:2306889‑M2/32‑1 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgg > 1:1308856‑M2/29‑64 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:3905908‑M2/29‑71 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:614819‑M2/29‑71 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg < 1:3679962‑M2/43‑1 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg < 1:2075670‑M2/43‑1 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGt < 1:3170454‑M2/44‑1 (MQ=255) taatatcagtaaaccggccataaccCATGAAGAAAAATCGCGCtttt > 1:1071179‑M2/26‑47 (MQ=255) taatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt > 1:3886813‑M2/26‑49 (MQ=255) taatataagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa > 1:569627‑M2/26‑52 (MQ=255) atatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATcc > 1:3435814‑M2/24‑71 (MQ=255) atatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATc < 1:1754718‑M2/47‑1 (MQ=255) atatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATc < 1:1163540‑M2/47‑1 (MQ=255) tatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAgtggcc < 1:4362434‑M2/33‑3 (MQ=255) tatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc < 1:2679148‑M2/33‑1 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATcg < 1:141056‑M2/15‑1 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCttt > 1:3951609‑M2/21‑41 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa > 1:3349977‑M2/21‑47 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:1119748‑M2/26‑1 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg < 1:2342885‑M2/35‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:3264828‑M2/25‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGT‑GGCAGGGGGCAAGTATCCCCTGCTtg < 1:1526632‑M2/55‑1 (MQ=255) aaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa > 1:2729402‑M2/16‑42 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:1002500‑M2/25‑1 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa > 1:2391026‑M2/15‑48 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAt > 1:3703686‑M2/15‑60 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATcc > 1:1053051‑M2/15‑62 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtg < 1:3995407‑M2/56‑1 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtg < 1:3106221‑M2/56‑1 (MQ=255) accggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg < 1:3515204‑M2/35‑1 (MQ=255) ccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat > 1:4057388‑M2/13‑70 (MQ=255) ccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtga > 1:51889‑M2/13‑69 (MQ=255) ccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGT‑GGCAGGGGGCAAGTATCCCCTGCTtgatga < 1:3007254‑M2/59‑1 (MQ=255) cggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt < 1:4081765‑M2/55‑1 (MQ=255) cggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga < 1:723739‑M2/60‑1 (MQ=255) ggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa > 1:9620‑M2/11‑37 (MQ=255) ggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga > 1:2640809‑M2/11‑70 (MQ=255) ggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTgatgat < 1:2522255‑M2/61‑1 (MQ=255) agttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgg > 1:4335504/1‑46 (MQ=255) gacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCt > 1:655921‑M2/10‑60 (MQ=255) gacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGata < 1:155572‑M2/62‑1 (MQ=255) cataaccCATGAAGAAAAATCGCGCTTTTTTGAAg > 1:1804397‑M2/8‑35 (MQ=255) cataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGatat > 1:779199‑M2/8‑70 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATAATATTaa > 1:2952696‑M2/5‑70 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgg > 1:3493174‑M2/4‑39 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAc > 1:3567971‑M2/4‑71 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACg > 1:1893551/1‑71 (MQ=255) cCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACgg > 1:1716947‑M2/2‑71 (MQ=255) | AGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGC > W3110S.gb/4124435‑4124574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |