| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 641963 | 30 (0.630) | 21 (0.480) +AGAA |
5/94 | NT | 36.3% | coding (653/1239 nt) | ybdR | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding |
| ? | W3110S.gb | = 4186745 | 50 (1.050) | coding (255/420 nt) | pioO | part of gsp divergon involved in type II protein secretion | |||||
CGAAGTCACTGTAGAGGCTGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTCGCGGTTGAGAATGCCCCCTCTT > W3110S.gb/4186676‑4186815 | cGAAGTCACTGTAGAGGCTGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGc < 1:3975373/71‑1 (MQ=255) gAAGTCACTGTAGAGGCTGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGc < 1:3803729/70‑1 (MQ=255) aaGTCACTGTAGAGGCTGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCa > 1:4099944/1‑71 (MQ=255) gTCACTGTAGAGGCTGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCAc > 1:3638466/1‑70 (MQ=255) aCTGTAGAGGCTGAAACGCCAGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCa > 1:1816796/1‑66 (MQ=255) cTGTAGAGGCTGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTcccc > 1:4167964/1‑71 (MQ=255) tGTAGAGGCTGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCAc > 1:4134141/1‑65 (MQ=255) tGTAGAGGCTGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCcg > 1:2867835/1‑71 (MQ=255) gTAGAGGCTGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCa > 1:3717904/1‑63 (MQ=255) gTAGAGGCTGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCcgt > 1:1905267/1‑71 (MQ=255) gagGCTGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCcgtcgt > 1:38966/1‑71 (MQ=255) tgCTGAAACGCCTGCTTTTAAACAATCAACACAACACTATTTTTTCAAAAAACAGCCACTCCCCgtcgtc > 1:4002949/2‑70 (MQ=255) ggCTGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCgtcgtc > 1:3148072/1‑70 (MQ=255) ggCTGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCgtcgtc > 1:1627845/1‑70 (MQ=255) gCTGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCTTCGTCGa < 1:1019376/71‑1 (MQ=255) gCTGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGa < 1:4373602/71‑1 (MQ=255) tGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAAt > 1:2036795/1‑71 (MQ=255) tGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAAt > 1:873552/1‑71 (MQ=255) cGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCa > 1:4174260/1‑50 (MQ=255) cGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCgag > 1:378879/1‑70 (MQ=255) cGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCgag > 1:2126448/1‑70 (MQ=255) gCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCcgtcgt > 1:4121158/1‑56 (MQ=255) cTTTTAAACAATCAACACAACACTATTTCTTCAAAATACAGACa > 1:1515185/1‑44 (MQ=38) cTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTc < 1:1847721/65‑1 (MQ=255) tttAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGaggagg > 1:2191154/1‑70 (MQ=255) ttAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCa > 1:2956669/1‑41 (MQ=255) ttAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCgagg > 1:2527588/1‑66 (MQ=255) ttAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGaggagg > 1:385327/1‑69 (MQ=255) ttAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGaggagg < 1:2360284/69‑1 (MQ=255) tCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCTAATc < 1:3910468/50‑1 (MQ=255) tCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGAccc < 1:1556761/71‑1 (MQ=255) tCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGAccc < 1:515700/71‑1 (MQ=255) aacacaacacTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAg > 1:2769473/1‑71 (MQ=255) cacaacacTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGaa < 1:3046550/59‑1 (MQ=255) cacaacacTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGaa < 1:2422648/59‑1 (MQ=255) acaacacTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCg > 1:820567/1‑71 (MQ=255) acaacacTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCg > 1:3579232/1‑71 (MQ=255) caacacTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCgag < 1:459655/51‑1 (MQ=255) caacacTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGt > 1:2251313/1‑71 (MQ=255) acacTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGa > 1:3366312/1‑57 (MQ=255) acacTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTcg > 1:1976846/1‑71 (MQ=255) acacTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTc > 1:2774343/1‑70 (MQ=255) cTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCg < 1:2635519/44‑1 (MQ=255) cTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCg < 1:519993/44‑1 (MQ=255) cTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTCGCgg < 1:57719/71‑1 (MQ=255) tATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTCGCGGt > 1:3367144/1‑71 (MQ=255) aTTTCTTCAAAAAACAGCCACTCCCCGTCGTCGaa > 1:3039923/1‑35 (MQ=255) aTTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGAc > 1:2913567/1‑56 (MQ=255) aTTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTCGCGGtt > 1:29588/1‑71 (MQ=255) tttCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTCGCGGtt > 1:1588609/1‑70 (MQ=255) tttCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTCGCGGt < 1:3158750/69‑1 (MQ=255) tcttcAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGAt < 1:3200995/50‑1 (MQ=255) tcttcAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTCGCGGtt > 1:3015087/1‑68 (MQ=255) tcttcAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTCGCGGtt > 1:3799081/1‑68 (MQ=255) cttcAAAAAACAGttcttcaacaacaaaaaatctgtttctcaccgtt > 1:2349577‑M2/1‑13 (MQ=255) cttcAAAAAACAGttcttcaacaacaaaaaatctgttt > 1:4389952‑M2/1‑13 (MQ=255) cttcAAAAAACAGttcttcaacaacaaaaaatctgt > 1:434571‑M2/1‑13 (MQ=255) cttcAAAAAACAGttcttcaacaacaaaaaatctgt < 1:1141968‑M2/36‑24 (MQ=255) cttcAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTCGCGGtt < 1:2113614/67‑1 (MQ=255) cttcAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTCGCGGTTgag < 1:168141/70‑1 (MQ=255) cttcAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTCGCGGTTgag > 1:116947/1‑70 (MQ=255) cttcAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTCGCGGTTgag < 1:2063313/70‑1 (MQ=255) cttcAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTCGCGGTTgag < 1:2384467/70‑1 (MQ=255) ttcAAAAAACAGttcttcaacaacaaaaaatctgtttctcacc > 1:3912935‑M2/1‑12 (MQ=255) ttcAAAAAACAGttcttcaacaacaaaaaatctgtttctcacc > 1:2135925‑M2/1‑12 (MQ=255) ttcAAAAAACAGttcttcaacaacaaaaaatctgttt > 1:2287302‑M2/1‑12 (MQ=255) ttcAAAAAACAGttcttcaacaacaaaaaatctgt > 1:1424860‑M2/1‑12 (MQ=255) ttcAAAAAACAGttcttcaacaacaaaaaatctgt > 1:1328700‑M2/1‑12 (MQ=255) ttcAAAAAACAGttcttcaacaacaaaaaatctgt > 1:44519‑M2/1‑12 (MQ=255) ttcAAAAAACAGttcttcaacaacaaaaaatctgt > 1:364086‑M2/1‑12 (MQ=255) tcAAAAAACAGttcttcaacaacaaaaaatctgtttctcaccg < 1:1354047‑M2/43‑33 (MQ=255) tcAAAAAACAGttcttcaacaacaaaaaatctgttt < 1:3219226‑M2/36‑26 (MQ=255) cAAAAAACAGttcttcaacaacaaaaaatctgtttctcaccg < 1:2069484‑M2/42‑33 (MQ=255) cAAAAAACAGttcttcaacaacaaaaaatctgtttctcaccg < 1:1861547‑M2/42‑33 (MQ=255) cAAAAAACAGttcttcaacaacaaaaaatctgtttctcacc < 1:2153421‑M2/41‑32 (MQ=255) cAAAAAACAGttcttcaacaacaaaaaatctgttt < 1:983475‑M2/35‑26 (MQ=255) cAAAAAACAGttcttcaacaacaaaaaatctgttt < 1:167079‑M2/35‑26 (MQ=255) cAAAAAACAGttcttcaacaacaaaaaatctgttt > 1:4028366‑M2/1‑10 (MQ=255) cAAAAAACAGttcttcaacaacaaaaaatctgttt < 1:287086‑M2/35‑26 (MQ=255) cAAAAAACAGttcttcaacaacaaaaaatctgttt < 1:2929434‑M2/35‑26 (MQ=255) aaaaCAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTCGCGGTTGAGAATGccc > 1:3861221/1‑71 (MQ=255) gCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTCGCGGTTGAGAATGCCCCCtctt > 1:3232151/1‑71 (MQ=255) | CGAAGTCACTGTAGAGGCTGAAACGCCCGCTTTTAAACAATCAACACAACACTATTTCTTCAAAAAACAGCCACTCCCCGTCGTCGAATCCGTCGAGGAGGAAGATGACCCAGGCGTCGCGGTTGAGAATGCCCCCTCTT > W3110S.gb/4186676‑4186815 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |