| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1209382 | 7 (0.150) | 14 (0.430) | 11/70 | NT | 72.2% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 6 (0.190) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
TGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACC > W3110S.gb/1211109‑1211248 | tGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCagag > 1:1266076/1‑71 (MQ=255)tGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCagag > 1:4012338/1‑71 (MQ=255) gCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc < 1:966916‑M2/71‑2 (MQ=255) tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGTACACCAACAGGTAATGCAGAGccttc > 1:2232950‑M2/1‑65 (MQ=255) tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct < 1:1530244‑M2/71‑7 (MQ=255) tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct < 1:3691444‑M2/71‑7 (MQ=255) cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc < 1:2655048‑M2/71‑8 (MQ=255) ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctccca > 1:2070784‑M2/1‑61 (MQ=255) gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc > 1:1234230‑M2/1‑47 (MQ=255) gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc > 1:4412113‑M2/1‑47 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc < 1:747091‑M2/69‑24 (MQ=255) tGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcga < 1:2953346‑M2/69‑26 (MQ=255) gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagc > 1:1660771‑M2/1‑42 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttatcccaaaccaaggttttcgagagccgtttg > 1:998111‑M2/1‑36 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATg < 1:4079995/59‑1 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgca < 1:1872953‑M2/71‑38 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcac > 1:3597577‑M2/1‑32 (MQ=255) ggAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATaa > 1:2139981/1‑69 (MQ=255) gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt > 1:752745/1‑53 (MQ=255) ggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttg > 1:3636986‑M2/1‑23 (MQ=255) cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa > 1:1790277/1‑45 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttc > 1:1364288‑M2/1‑16 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca > 1:3543524/1‑71 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca > 1:4429481/1‑71 (MQ=255) aCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgat > 1:3247459‑M2/1‑15 (MQ=255) aCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttga < 1:2498848‑M2/70‑56 (MQ=255) ggTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatc < 1:3265255‑M2/71‑60 (MQ=255) tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgca > 1:2039635‑M2/1‑10 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtt < 1:3125360‑M2/38‑34 (MQ=255) cAGAGCATTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATg > 1:1124550/1‑54 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacg > 1:3984171‑M2/1‑4 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacg > 1:3429759‑M2/1‑4 (MQ=255) gagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgattt > 1:767699‑M2/1‑3 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAcc < 1:2140863/70‑1 (MQ=255) | TGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACC > W3110S.gb/1211109‑1211248 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |