| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 38 (0.800) | 28/102 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
Only 100 of 104 total aligned reads displayed.
CCACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAAA > W3110S.gb/3932863‑3933002 | ccaccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTg < 1:846684/71‑1 (MQ=255) cTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgat < 1:1121430‑M2/71‑5 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCg > 1:3236136‑M2/62‑71 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCg > 1:1526869‑M2/62‑71 (MQ=255) aTGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc < 1:2706647‑M2/71‑7 (MQ=255) tGACTCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt < 1:4276883‑M2/65‑2 (MQ=255) tGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgat < 1:1490253‑M2/68‑5 (MQ=255) tGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt < 1:3960317‑M2/65‑2 (MQ=255) gtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCgg > 1:1245950‑M2/61‑71 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGc > 1:2677208‑M2/59‑71 (MQ=255) cacctctgactgagagtttactcacttagccgcctgtccactattgctgggtaagatcAGTTATCCCGGGc > 1:1121118‑M2/59‑71 (MQ=255) cGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:3784466‑M2/66‑6 (MQ=255) ctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCTGGCCTCGc > 1:729356‑M2/54‑71 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:1423972‑M2/70‑16 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:1265368‑M2/70‑16 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:222227‑M2/70‑16 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:668070‑M2/70‑16 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacg < 1:3651713‑M2/69‑15 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTg < 1:1661462‑M2/20‑1 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTg > 1:4190188‑M2/51‑70 (MQ=255) ctgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:381988‑M2/22‑1 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGGGtgatcctacccacgta > 1:296126‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTAAAAATCGGCACCACCGAAGTGtgatcctacccacgt > 1:1587138‑M2/1‑53 (MQ=255) tgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa > 1:4403739‑M2/49‑70 (MQ=255) tgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:3881480‑M2/22‑1 (MQ=255) agtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg < 1:3952157‑M2/27‑1 (MQ=255) gCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:2746497‑M2/65‑20 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga < 1:2131550‑M2/68‑24 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:2372212‑M2/1‑45 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:38457‑M2/1‑45 (MQ=255) tttATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca < 1:637925‑M2/69‑26 (MQ=255) tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:4039231‑M2/41‑69 (MQ=255) ctcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGTGAAg < 1:2801800‑M2/32‑1 (MQ=255) ctcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAg < 1:2283644‑M2/32‑1 (MQ=255) ctcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAg < 1:648467‑M2/32‑1 (MQ=255) ctcacttagccgcgtgtccactattgctgggtaagatcAGTGATCACGGGCCTCGCTGAAAAGTGGGAAg < 1:2694286‑M2/32‑1 (MQ=255) ataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggc < 1:926317‑M2/71‑31 (MQ=255) taACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggc > 1:1245121‑M2/1‑40 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTc > 1:4067746‑M2/36‑51 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTc < 1:2758844‑M2/34‑1 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg > 1:1707465‑M2/36‑71 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg > 1:516898‑M2/36‑71 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg > 1:2204477‑M2/36‑71 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg > 1:3966334‑M2/36‑71 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg > 1:721801‑M2/36‑71 (MQ=255) aCCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggccta > 1:3911971‑M2/1‑38 (MQ=255) aCCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggac < 1:794140‑M2/62‑25 (MQ=255) aCCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggac < 1:1578355‑M2/62‑25 (MQ=255) ccGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:937247‑M2/1‑37 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:504197‑M2/33‑70 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:4006587‑M2/33‑70 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:2558629‑M2/38‑1 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:1779970‑M2/32‑69 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:3552317‑M2/38‑1 (MQ=255) tCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacataggcctaagcg > 1:2807312‑M2/1‑34 (MQ=255) tCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcg > 1:2998681‑M2/1‑34 (MQ=255) tCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc < 1:1162638‑M2/70‑37 (MQ=255) cTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc < 1:1896765‑M2/69‑37 (MQ=255) cTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:1723835‑M2/1‑33 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:917745‑M2/1‑32 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:492142‑M2/49‑20 (MQ=255) cgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGa < 1:949368‑M2/30‑1 (MQ=255) tgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaa < 1:3055941‑M2/23‑1 (MQ=255) gtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTa > 1:3990415‑M2/24‑70 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGACAGCGAAGACGGTaa > 1:546356‑M2/23‑70 (MQ=255) aaTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttct > 1:3585026‑M2/1‑26 (MQ=255) aaTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttct > 1:4091534‑M2/1‑26 (MQ=255) ccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAg < 1:3441877‑M2/32‑1 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttg < 1:2512162‑M2/71‑47 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttg < 1:1292832‑M2/71‑47 (MQ=255) tttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:1266876‑M2/1‑24 (MQ=255) tttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:790919‑M2/1‑24 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:1985546‑M2/52‑1 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:2454546‑M2/52‑1 (MQ=255) tAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttt < 1:2789535‑M2/71‑50 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:3250785‑M2/22‑1 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg < 1:1205657‑M2/27‑1 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg < 1:370702‑M2/27‑1 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:2606860‑M2/52‑1 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc > 1:561864‑M2/19‑70 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:2712293‑M2/18‑71 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:4351497‑M2/18‑71 (MQ=255) aaaaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaag < 1:1523751‑M2/56‑36 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:3177078‑M2/17‑70 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:1024225‑M2/17‑70 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCa < 1:3751767‑M2/35‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata > 1:1479071‑M2/16‑71 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:4432105‑M2/16‑69 (MQ=255) aaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttca > 1:3734112‑M2/1‑19 (MQ=255) aaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttc > 1:1954698‑M2/1‑19 (MQ=255) tCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaa > 1:3448692‑M2/1‑17 (MQ=255) ggCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaaacgaggttcttgttttcaaat > 1:1901841‑M2/1‑15 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTcc < 1:4050844‑M2/62‑1 (MQ=255) caccacCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgt < 1:804117‑M2/71‑59 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:117719‑M2/8‑61 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCg > 1:2077363‑M2/3‑71 (MQ=255) tcAGTGATCCCGGGCCTCGCT‑AAAAGTGGGAAGTCAGCg < 1:297794‑M2/37‑1 (MQ=255) aGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTa < 1:3295578/71‑1 (MQ=255) gTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTaa < 1:2284110/71‑1 (MQ=255) gATCCAGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTaaa > 1:4213131/1‑70 (MQ=255) | CCACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAAA > W3110S.gb/3932863‑3933002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |