| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3873994 = | 95 (2.000) | 4 (0.090) | 3/94 | NT | 5.1% | coding (87/843 nt) | yibA | lyase containing HEAT‑repeat |
| ? | W3110S.gb | 4016463 = | 63 (1.440) | pseudogene (68/246 nt) | yrhC | ECK3468:JW5678:b4552; hypothetical protein fragment | |||||
CTCTGGCAGATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTG > W3110S.gb/4016395‑4016532 | ctctGGCAGATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGt > 1:3762390/1‑71 (MQ=34)ctctGGCAGATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGt > 1:3314671/1‑71 (MQ=34)ctatGGCAGATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGt > 1:313197/4‑71 (MQ=21) tGGCAGATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTc > 1:3169204/1‑71 (MQ=34) gATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCt < 1:4090817/67‑1 (MQ=35) tGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACa < 1:651567/69‑1 (MQ=35) tGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAtt < 1:320135/71‑1 (MQ=34) gAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCtt < 1:1870461/65‑1 (MQ=35) gAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAtt > 1:3285781/1‑70 (MQ=35) gAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAtt > 1:2126614/1‑70 (MQ=35) gAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAtt > 1:187065/1‑70 (MQ=35) gAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAtt > 1:1042524/1‑70 (MQ=35) aaaTCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATtta < 1:3500759/71‑1 (MQ=38) aaTCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATAATCATTTAGTTTCTTACATttat > 1:4255522/1‑71 (MQ=255) aTCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATttatt < 1:2786001/71‑1 (MQ=39) aTCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATttatt < 1:3508995/71‑1 (MQ=39) ccTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATttatta > 1:422562/1‑70 (MQ=40) cTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAg < 1:1473565/53‑1 (MQ=35) ttttCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATtata > 1:2862812/1‑70 (MQ=40) tttCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATtatat > 1:3620743/1‑70 (MQ=40) ttCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATtatata > 1:1250747/1‑70 (MQ=40) ttCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATtatata > 1:3621007/1‑70 (MQ=40) ttCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATtatata > 1:43771/1‑70 (MQ=40) ttCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATtatata > 1:1789124/1‑70 (MQ=40) ttCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATtatata < 1:1744250/70‑1 (MQ=40) cAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATtta < 1:3240531/61‑1 (MQ=39) aGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCa < 1:1605616/71‑1 (MQ=39) gAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCt < 1:4302942/49‑1 (MQ=38) gAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATa > 1:4159578/1‑71 (MQ=39) aTTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATAct > 1:413785/1‑71 (MQ=39) ttGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATActc > 1:2228846/1‑71 (MQ=39) ttGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATActc > 1:371480/1‑71 (MQ=39) tGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCa > 1:402075/1‑65 (MQ=40) gCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTc > 1:3868317/1‑43 (MQ=35) gCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCtt > 1:808981/1‑71 (MQ=38) gCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCtt > 1:1219996/1‑71 (MQ=38) gATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAttt < 1:3243116/49‑1 (MQ=32) gATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCttt < 1:2187219/70‑1 (MQ=35) atcatcAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTAc < 1:1029108/71‑1 (MQ=34) tcatcaAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACt > 1:4399721/1‑71 (MQ=34) atcaAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAAc < 1:1193932/56‑1 (MQ=35) caAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGcc > 1:3042293/1‑71 (MQ=34) aaGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCtt < 1:41788/62‑1 (MQ=35) aaGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCct > 1:3340701/1‑71 (MQ=34) aaGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCct > 1:1240581/1‑71 (MQ=34) gTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCttt < 1:899471/61‑1 (MQ=35) gaaactaaatgatgatgaattatttAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGc < 1:1402992‑M2/41‑1 (MQ=255) aaGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctttct > 1:1772047/1‑71 (MQ=34) aactaaatgatgatgaattatttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctttctt > 1:710734‑M2/24‑71 (MQ=255) aGCGAAATAATTCATCATCATTTAGTTTCTTACAttt < 1:1039793/37‑1 (MQ=33) aGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctttctt < 1:1962042/71‑1 (MQ=34) aGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctttctt > 1:2239652/1‑71 (MQ=34) aGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctttctt < 1:4046597/71‑1 (MQ=34) ctaaatgatgatgaattatttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCtttctttt < 1:2206965‑M2/50‑1 (MQ=255) cGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCtttctttt < 1:456766/71‑1 (MQ=34) cGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCtttctttt < 1:2363121/71‑1 (MQ=34) aaaTAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCtttcttttct < 1:2702873/71‑1 (MQ=34) aataatTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTg < 1:3300459/71‑1 (MQ=34) aataatTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTg < 1:1217867/71‑1 (MQ=34) ataatTCATCATCATTTAGTTTCTTACATTTATtatata < 1:3161361/39‑1 (MQ=40) ataatTCATCATCATTTAGTTTCTTACATTTATtatata < 1:90338/39‑1 (MQ=40) ataatTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTgg > 1:2290006/1‑71 (MQ=34) ataatTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTgg > 1:3544912/1‑71 (MQ=34) taatTCATCATCATTTAGTTTCTTACATTTATTATATAAACCa < 1:1699415/43‑1 (MQ=38) taatTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgt < 1:1535958/71‑1 (MQ=34) atTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCtt < 1:3908584/48‑1 (MQ=38) atTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctat > 1:4177357/1‑57 (MQ=255) gatgaattatttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTg > 1:896562‑M2/13‑65 (MQ=255) catcatcatTTAGTTTCTTACATTTATTATATAAAc < 1:2886248/36‑1 (MQ=40) catcatcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgtatgt < 1:755503/70‑1 (MQ=35) atcatcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgtatgtat < 1:3061581/71‑1 (MQ=34) tcatcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTgg < 1:54843/63‑1 (MQ=35) tcatcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTgg < 1:60110/63‑1 (MQ=35) tcatcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTgg < 1:3106627/63‑1 (MQ=35) tcatcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgtatgt < 1:2496193/68‑1 (MQ=35) atcatTTAGTTTCTTACATTTATTATATAAACCATa > 1:3354436/1‑36 (MQ=40) atcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTAttt > 1:3646052/1‑70 (MQ=35) atcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTg < 1:4250527/71‑1 (MQ=34) tcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctt > 1:3839433/1‑50 (MQ=38) tcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgtatgt < 1:1061746/65‑1 (MQ=35) tcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgtatgt < 1:1593165/65‑1 (MQ=35) tcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTAttt > 1:4132831/1‑69 (MQ=35) tcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGa < 1:1830607/71‑1 (MQ=34) atttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGAc < 1:3139222‑M2/66‑1 (MQ=255) atttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGAc < 1:2569247‑M2/66‑1 (MQ=255) atttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACa > 1:1988372‑M2/5‑71 (MQ=255) atttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACa > 1:2019902‑M2/5‑71 (MQ=255) atttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACa > 1:2388091‑M2/5‑71 (MQ=255) tAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACa > 1:3572889‑M2/2‑68 (MQ=255) tAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACAtt < 1:4328136‑M2/69‑1 (MQ=255) tAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTg > 1:3489734‑M2/2‑71 (MQ=255) aGTTTCTTACATTTATTATATAAACCATATTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACa > 1:2242599/1‑67 (MQ=25) | CTCTGGCAGATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTG > W3110S.gb/4016395‑4016532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |