| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 2,341,910 | A→G | 8.6% | G727G (GGT→GGC) | gyrA ← | DNA gyrase (type II topoisomerase), subunit A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,341,910 | 0 | A | G | 8.6% | 145.1 / 5.8 | 58 | G727G (GGT→GGC) | gyrA | DNA gyrase (type II topoisomerase), subunit A |
| Reads supporting (aligned to +/- strand): ref base A (24/29); new base G (2/3); total (26/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.22e-01 | |||||||||||
CGTTTTGCGTTGCGGTGAGGATTGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCAGCCCATCGCACGGACAGAAGACTCTTTAA > W3110S.gb/2341840‑2341974 | cGTTTTGCGTTGCGGTGAGGATTGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCa > 1:2731638/1‑71 (MQ=255) tttGCGTTGCGGTGAGGATTGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCAcc > 1:4054356/1‑70 (MQ=255) ttgcgttgcgGTGAGGATTGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCt < 1:1233964/70‑1 (MQ=255) ttgcgttgcgGTGAGGATTGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCt > 1:1933867/1‑70 (MQ=255) gttgcgGTGAGGATTGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCg < 1:754245/71‑1 (MQ=255) ttgcgGTGAGGATTGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCg < 1:1130317/70‑1 (MQ=255) ttgcgGTGAGGATTGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCg < 1:4036800/70‑1 (MQ=255) ttgcgGTGAGGATTGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCg < 1:1850881/70‑1 (MQ=255) gcgGTGAGGATTGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTa > 1:4199825/1‑64 (MQ=255) gcgGTGAGGATTGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGaa < 1:883350/70‑1 (MQ=255) gcgGTGAGGATTGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGaa < 1:878318/70‑1 (MQ=255) aGGATTGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACcgcg < 1:21000/71‑1 (MQ=255) ggATTGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACcgcg < 1:1308687/70‑1 (MQ=255) ttGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCGCCTAAACGAATACCACGAaca > 1:4277951/1‑71 (MQ=255) ttGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCGCCTAAACGAATACCACGAaca > 1:4283143/1‑71 (MQ=255) tGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCa < 1:2075543/49‑1 (MQ=255) cgcCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACAcc < 1:1543110/70‑1 (MQ=255) ccATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCggt < 1:3118046/71‑1 (MQ=255) cATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCggtg > 1:2531845/1‑71 (MQ=255) tCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCggtggt > 1:979756/1‑71 (MQ=255) gCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCAcc > 1:3579130/1‑42 (MQ=255) gCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGgtgt < 1:2236340/71‑1 (MQ=255) aCGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGaa > 1:1124007/1‑47 (MQ=255) aCGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGaa > 1:1745606/1‑47 (MQ=255) aCGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTg > 1:3211023/1‑70 (MQ=255) cGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAAt < 1:1202307/47‑1 (MQ=255) gAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGaa > 1:2145536/1‑45 (MQ=255) aGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATAc > 1:1084278/1‑47 (MQ=255) aGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATAc > 1:704355/1‑47 (MQ=255) aGGCACGATCAGAGAGACGACTTTATCGCCTTAACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCAGc > 1:1941865/1‑71 (MQ=255) ggCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCggtggt > 1:3037985/1‑62 (MQ=255) tcACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCa < 1:3822439/66‑1 (MQ=255) gCACGATCAGAGAGACGACTTTATCGCCTTCGCCTAAACGAATACCACGAACACCGGTGGTGTTGCAGccc < 1:3668633/71‑1 (MQ=255) gCACGATCAGAGAGACGACTTTATCGCCTTCACCTa < 1:2428514/36‑1 (MQ=255) gCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCggt < 1:3493553/58‑1 (MQ=255) gCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCggt < 1:3498472/58‑1 (MQ=255) aCGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCg < 1:1208932/38‑1 (MQ=255) aCGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGaa < 1:1154533/40‑1 (MQ=255) aCGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGaa > 1:1604364/1‑40 (MQ=255) aCGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCggtg > 1:4045489/1‑57 (MQ=255) gATCAGAGAGACGACTTTATCGCCTTCACCTAAGCg < 1:2408132/36‑1 (MQ=255) gATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCAGCCCATCg < 1:2969344/71‑1 (MQ=255) aTCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCAGCCCATCGc < 1:4418235/71‑1 (MQ=255) cAGAGAGACGACTTTATCGCCTTCACCTAAGCGaa > 1:447526/1‑35 (MQ=255) cAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCAGCCCATCGCAc > 1:248444/1‑71 (MQ=255) gagaCGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCAGCCCATCGCACGGa > 1:1239629/1‑70 (MQ=255) gagaCGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCAGCCCATCGCACGGAc < 1:2127340/71‑1 (MQ=255) agaCGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGgtgt < 1:2973484/51‑1 (MQ=255) agaCGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCAGCCCATCg < 1:3084757/63‑1 (MQ=255) cgacTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCAGCCCATCGc < 1:733138/61‑1 (MQ=255) cgacTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCAGCCCATCGCACGGACagaa < 1:2234132/71‑1 (MQ=255) tATCGCCTTCGCCTAAACGAATACCACGAACACCGGTGGTGTTGCAGCCCATCGCACGGACAGAAGAct < 1:3721397/69‑1 (MQ=255) tATCGCCTTCGCCTAAACGAATACCACGAACACCGGTGGTGTTGCAGCCCATCGCACGGACAGAAGAct < 1:3092603/69‑1 (MQ=255) tATCGCCTTCACCTAAGCGAATACCGCGAACACCggt > 1:401298/1‑37 (MQ=255) tATCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCa > 1:2677080/1‑46 (MQ=255) tATCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCa > 1:616134/1‑46 (MQ=255) tATCGCCTTCACCTAAGCGAATACAGCGAACACCGGTGGTGTTGc > 1:1933178/1‑45 (MQ=255) tCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCAGCCCATCGCACGGACAGAAGACTCtt > 1:3396422/1‑70 (MQ=255) gCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCAGCCCATCGCACGGACAGAAGACTCTTTaa < 1:1289572/71‑1 (MQ=255) gCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCAGCCCATCGCACGGACAGAAGACTCTTTa < 1:4246012/70‑1 (MQ=255) | CGTTTTGCGTTGCGGTGAGGATTGCGCCATCGCCACGAGGCACGATCAGAGAGACGACTTTATCGCCTTCACCTAAGCGAATACCGCGAACACCGGTGGTGTTGCAGCCCATCGCACGGACAGAAGACTCTTTAA > W3110S.gb/2341840‑2341974 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |