| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 70537 | 344 (7.060) | 3 (0.070) | 3/88 | NT | 1.0% | coding (151/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | = 70552 | 283 (6.600) | coding (166/879 nt) | araC | DNA‑binding transcriptional dual regulator | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTGAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/70462‑70537‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaccaCCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAAATC < W3110S.gb/70552‑70483 ATTGAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCT < 1:3933443/71‑1ATTGAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCT < 1:3877832/71‑1ATTGAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCT > 1:1095811/1‑71ATTGAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCT < 1:1356838/71‑1ATTGAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCT > 1:2889317/1‑71 TTGAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTC < 1:3557368/71‑1 TTGAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTC < 1:3552039/71‑1 TTGAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCT > 1:2473724/1‑70 TTGAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCT > 1:2482160/1‑70 TGAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCA > 1:3982886/1‑71 TGAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCA > 1:2520980/1‑71 TGAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCA > 1:2854501/1‑71 TGAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCA > 1:3336844/1‑71 GAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCAC > 1:3472986/1‑71 GAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCAC > 1:550085/1‑71 GAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCA > 1:4572157/1‑70 GAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCA < 1:2278918/70‑1 AGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCAC < 1:3797663/70‑1 GGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCACCA < 1:2588177/71‑1 AACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCT < 1:4565867/62‑1 CGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCACC > 1:684217/1‑64 CGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCA > 1:4164325/1‑62 ATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCT < 1:462018/55‑1 CTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCAC < 1:266060/56‑1 CTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCA > 1:4592007/1‑55 TCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTC > 1:2330503/1‑53 TCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTC > 1:3236840/1‑53 GATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCACCA > 1:1894946/1‑55 ATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCACCA > 1:3635294/1‑54 ATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCACCA < 1:1198955/54‑1 ATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCT < 1:492741/49‑1 TTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCT > 1:1181734/1‑48 TTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCACC > 1:10954/1‑51 TTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCAC > 1:2120871/1‑50 TTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCAC < 1:3645828/49‑1 TTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCA > 1:2025955/1‑48 TTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCAC < 1:1158731/48‑1 TTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCT > 1:2144429/1‑44 TATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCACCACCCCCTGACCGCGAATGGTGAGA < 1:1943212/70‑1 ACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCA > 1:3272751/1‑39 CCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCACCACCCCCTGACCGCGAATGGTGAGAT > 1:4239938/1‑65 TGGGAATGAAAGGTTATATTCTCAATCTCACCACCCCCTGACCGCGAATGGTG > 1:4521722/1‑53 aaTCACCACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTT > 1:3854662/3‑47 TCACCACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAA < 1:2586015/70‑1 CACCACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAA < 1:1945354/70‑1 CACCACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATT < 1:1537451/49‑1 CACCACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATT < 1:211795/49‑1 ACCACCCCCTGACCGGGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAA < 1:3021450/71‑1 ACCACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAA < 1:113760/71‑1 ACCACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAA < 1:1052766/71‑1 ACCACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAA < 1:4362042/71‑1 ACCACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAA < 1:3439488/71‑1 ACCACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAA < 1:4477519/71‑1 ACCACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAA < 1:2308980/71‑1 ACCACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCC < 1:1088869/51‑1 ACCACCCCCTGACCGCGAATGGTGAGATTAAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAA < 1:1401019/70‑1 CCACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAAA > 1:2280786/1‑71 CCACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAA < 1:953979/70‑1 CCACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTCTCATTCCCAGCGGTCGGTCGATAAAAAAA < 1:688825/71‑1 CACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAAAT > 1:2076679/1‑71 CACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAAAT > 1:1275694/1‑71 CACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAAAT > 1:1184823/1‑71 CACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAAAT > 1:811867/1‑71 CACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAA < 1:1056270/68‑1 CACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATA > 1:2440545/1‑64 CACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCA < 1:3463797/50‑1 CACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCAT > 1:2689920/1‑45 ACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAAATa < 1:2969659/71‑2 ACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAAATa < 1:2964240/71‑2 ACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAAATC > 1:4427120/1‑71 ACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAAATC < 1:2602410/71‑1 ACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAAATC < 1:666389/71‑1 ACCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAAATC > 1:1160027/1‑71 ACCCCCTGACCGCGAATGGTGAGATTGAGAATATAAC > 1:130708/1‑37 ATTGAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCTCAATCTCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/70462‑70537‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaccaCCCCCTGACCGCGAATGGTGAGATTGAGAATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAAATC < W3110S.gb/70552‑70483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |