| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 236667 = | 805 (16.530) | 3 (0.070) | 3/90 | NT | 0.44% | coding (601/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 236684 = | 626 (14.280) | coding (618/732 nt) | dnaQ | DNA polymerase III epsilon subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 177 total aligned reads displayed.
ATGAGCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/236741‑236667‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgtACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCCCGTCTC > W3110S.gb/236684‑236753 ATGAGCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAA > 1:1417061/1‑71 TGAGCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAAT > 1:2519638/1‑71 TGAGCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAAT > 1:3111207/1‑71 GAGCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATT > 1:3248441/1‑71 GAGCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATT > 1:2416058/1‑71 GAGCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAAT > 1:4359632/1‑70 acCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATT < 1:1225853/68‑1 AGCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGGCTGACGTACAATGCGCTGAATTG > 1:3442285/1‑71 AGCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTG < 1:2763630/71‑1 AGCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTG < 1:1725096/71‑1 AGCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATT < 1:1287028/70‑1 AGCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATT < 1:2600844/70‑1 AGCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTT‑CCTGACGTACAATGCGCTGAATTGT < 1:2149250/71‑1 AGCTGCAATCTCTTCATCTGTCACAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTG > 1:2118679/1‑71 GCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTGT < 1:1755809/71‑1 GCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTGT < 1:4177969/71‑1 CTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTGT > 1:2937358/1‑70 CAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATT < 1:2408492/65‑1 AATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTG > 1:832906/1‑65 TCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATT < 1:3994002/62‑1 TCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTG > 1:295257/1‑61 TCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAA > 1:3292201/1‑58 TCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAA > 1:491399/1‑58 CTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATT < 1:4420855/59‑1 CTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATT < 1:101330/59‑1 TTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTG < 1:3855890/59‑1 CATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTGT > 1:3008640/1‑58 CATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTG > 1:298278/1‑57 CTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTG < 1:3245582/54‑1 CTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTG < 1:2798084/54‑1 CTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAA < 1:2801934/51‑1 TGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTGT > 1:3761301/1‑54 TGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATT > 1:225000/1‑52 TGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATT < 1:1667758/52‑1 TCGGAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAA < 1:3363991/48‑1 TCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTGT < 1:4033241/52‑1 TCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTGT < 1:3911345/52‑1 GCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAAT > 1:2458290/1‑47 GCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAA > 1:4572589/1‑46 CAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATT < 1:254149/47‑1 AAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTGT > 1:3189929/1‑48 AAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTGT > 1:2409648/1‑48 AAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATT < 1:4277506/45‑1 AAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAA > 1:1848900/1‑43 AAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTGT > 1:1423075/1‑46 AAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTGT < 1:3960388/46‑1 AAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTGT < 1:513103/46‑1 AAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTGT < 1:3479763/46‑1 AAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTGT > 1:3098339/1‑46 ACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTG > 1:1586876/1‑43 ACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATT < 1:219918/42‑1 AACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTG > 1:445400/1‑41 CGTACAATGCGCTGAATTGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGA > 1:1895621/1‑67 GTACAATGCGCTGAATTGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAG < 1:3624784/57‑1 TACAATGCGCTGAATTGTACGTCAGGCAAGTAAGTTACGC < 1:3794179/40‑1 ATTGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCCCG > 1:853206/1‑71 ATTGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGA < 1:1183703/50‑1 ATTGTAAGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCCCG > 1:593311/1‑71 TTGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCT < 1:2202228/59‑1 TTGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGAT < 1:947120/52‑1 TTGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAG < 1:793649/50‑1 TTGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATG < 1:2876742/45‑1 TTGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGC < 1:1928439/37‑1 TGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAG < 1:1624734/65‑1 TGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGC > 1:3405312/1‑57 TGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGC > 1:770482/1‑54 TGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTG < 1:3643092/53‑1 TGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGA > 1:2505350/1‑50 TGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGA < 1:1898658/45‑1 TGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAG < 1:2670869/41‑1 TGTACGACAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAG > 1:1851541/1‑49 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCCCGTCT > 1:4203322/1‑71 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCCCGTCT > 1:4430151/1‑71 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCCCGTCT > 1:2710836/1‑71 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCCCGTCT > 1:3689922/1‑71 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCCCGTC < 1:3802116/70‑1 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCCCGTC > 1:2501359/1‑70 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCC > 1:3595549/1‑66 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGA > 1:1114147/1‑62 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATG > 1:140046/1‑61 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCA > 1:4535034/1‑54 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTG > 1:3207319/1‑52 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGA > 1:3022180/1‑47 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAG > 1:2329370/1‑40 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACA > 1:4214853/1‑39 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACA > 1:2690651/1‑39 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGA > 1:127248/1‑37 GTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGA > 1:4091547/1‑37 GTACGTCAGGCAAGTAAGTTACGCGATGTTTTTGCGACAGATGAAGA > 1:449467/1‑47 GTACGTCAGGAAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGA > 1:2048279/1‑49 TACGTCAGGCAAGTAAGTTACGTGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCCCGTCTC > 1:129286/1‑71 TACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCCCGTCTC < 1:914924/71‑1 TACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCCCGTCTC > 1:2908645/1‑71 TACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCCCGTCTC < 1:1341599/71‑1 TACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCCCGTCTC < 1:844269/71‑1 TACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCCCGTCT > 1:663465/1‑70 TACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGAT < 1:673489/49‑1 TACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGA > 1:1983603/1‑48 TACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAA < 1:3278742/44‑1 TACGTCAGGCAAGGAAGTTACGCGTTGTTTTTGCGACAGAT < 1:1717567/41‑1 ATGAGCTGCAATCTCTTCATCTGTCGCAAAAACAACGCGTAACTTACTTGCCTGACGTACAATGCGCTGAATTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/236741‑236667‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgtACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGAAGAGATTGCAGCTCATGAAGCCCGTCTC > W3110S.gb/236684‑236753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |