| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 652499 = | 74 (1.520) | 3 (0.070) | 3/92 | NT | 4.7% | coding (1042/1659 nt) | citA | sensory histidine kinase in two‑component regulatory system with citB |
| ? | W3110S.gb | 652526 = | 54 (1.210) | coding (1069/1659 nt) | citA | sensory histidine kinase in two‑component regulatory system with citB | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCATCGCCAGCACGCGATCATACTCTTTCATCTGCAACAGACCATTGAGCGTCGACATCCAATTGAGATGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/652571‑652499‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcAATGGTCTGTTGCAGATGAAAGAGTATGATCGCGTGCTGGCGATGGTGCAGGGGGAGTCTCAGGCCCAG > W3110S.gb/652526‑652594 CCATCGCCAGCACGCGATCATACTCTTTCATCTGCAACAGACCATTGAGCGTCGACATCCAATTGAGATGC > 1:448575/1‑71 ATCGCCAGCACGCGATCATACTCTTTCATCTGCAACAGACCATTGAGCGTCGACATCCAATTGAGATGCTC > 1:2897562/1‑71 CGATCATACTCTTTCATCTGCAACAGACCATTGAGCGTCGACATCCAATTGAGATGCT > 1:2064573/1‑58 TGAGCGTCGACATCCAATTGAGATGCTCAATGGTCTGTTGCAGATGAAAGAGTATGATCGCGTGCTGGCGA > 1:4299637/1‑71 TCGACATCCAATTGAGATGCTCAATGGTCTGTTGC < 1:4320866/35‑1 GACATCCAATTGAGATGCTCAATGGTCTGTTGCAGATGAAAGAGTATGATCGCGTGC > 1:4398618/1‑57 CTCAATGGTCTGTTGCAGATGAAAGAGTATGATCGCGTGCTGGCGATGGTGCAGGGGGAGTCTCAGGCCCA < 1:1963224/71‑1 CTCAATGGTCTGTTGCAGATGAAAGAGTATGATCGCGTGCTGGCGAT < 1:482827/47‑1 CAATGGTCTGTTGCAGATGAAAGAGTATGATCGCGTGCTGGCGATGGTGCAGGGGGAGTCTCAGGCCCAG > 1:3751920/1‑70 CAATGGTCTGTTGCAGATGAAAGAGTATGATCGCGTGCTGGCGATGGTGCAGGGGGAGTCTCAG > 1:17600/1‑64 CAATGGTCTGTTGCAGATGAAAGAGTATGATCGCGTGCTGGCGATGGTGCAG > 1:3615802/1‑52 CAATGGTCTGTTGCAGATGAAAGAGTATGATCGCGTGCTGGCGATG > 1:4429400/1‑46 CAATGGTCTGTTGCAGATGAAAGAGTATGATCGCGTGCTGGCGA < 1:3401939/44‑1 CCATCGCCAGCACGCGATCATACTCTTTCATCTGCAACAGACCATTGAGCGTCGACATCCAATTGAGATGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/652571‑652499‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcAATGGTCTGTTGCAGATGAAAGAGTATGATCGCGTGCTGGCGATGGTGCAGGGGGAGTCTCAGGCCCAG > W3110S.gb/652526‑652594 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |