New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 738472	38 (0.780)	4 (0.090)	3/92	NT	11.8%	intergenic (+89/‑42)	ybfL/ybfD	ECK0694:JW0695:b0705; predicted transposase/conserved hypothetical protein
	?	W3110S.gb	4016100 =	25 (0.560)					intergenic (‑61/+185)	yhhI/yrhC	predicted transposase/ECK3468:JW5678:b4552; hypothetical protein fragment

GTACTAAATAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTGAAGCTGTTTTTTATTGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/738400‑738472 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttCAGGTAATAAGGAATATCTCAATTTTTAAACATAAAATGCGAATTATTTAG  >  W3110S.gb/4016100‑4016150                                                                                                                              GTACTAAATAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTGAAGCTGTTTTTTATTG                                                        <  1:4278828/70‑1  TACTAAATAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTGAAGCTGTTTTTTATTGCT                                                      <  1:4529277/71‑1   ACTAAATAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTGAAGCTGTTTTTTATTGCT                                                      <  1:2342326/70‑1     TAAATAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTGAAGCTGTTTTTTATTGCT                                                      >  1:879904/1‑68                  TTTTATGTTTAAAAATTGAGATATTCCTTATTACCTGAAGCTGTTTTTTATTGCT                                                      <  1:3753741/55‑1                         TTTAAAAATTGAGATATTCCTTATTACCTGAAGCTGTTTTTTATTGCT                                                      <  1:2559606/48‑1                                                     TGAAGCTGTTTTTTATTGCTTCAGGTAATAAGGAATATCTCAATTTTTAAACATAA                  <  1:3267870/56‑1                                                      aAAGCTGTTTTTCATAGCTTTAGGTAATAAGGAATATCTCTATTTT                           >  1:3880804/2‑46                                                      GAAGCTGTTTTTTATTGCTTCAGGTAATAAGGAATATCTCAATTTTTAAACATAAAATGCGAATTATTTAG  >  1:1998310/1‑71                                                               TTTTATTGCTTCAGGTAATAAGGAATATCTCAATTTTTAAA                       >  1:3743367/1‑41                                                                                                                              GTACTAAATAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTGAAGCTGTTTTTTATTGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/738400‑738472 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttCAGGTAATAAGGAATATCTCAATTTTTAAACATAAAATGCGAATTATTTAG  >  W3110S.gb/4016100‑4016150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.