New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | W3110S.gb | 2018571 = | 4 (0.080) | 35 (0.760) | 26/94 | NT | 90.3% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase |
ACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2018637‑2018571 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > W3110S.gb/2519723‑2519791 ACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAA < 1:3773681/71‑1 ACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAA < 1:3779101/71‑1 GCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGC > 1:1863631/1‑71 CGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATTGAGGGTGGGATCGCCCATAAGCGCT < 1:3944131/71‑1 GAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAAC > 1:336879/1‑70 GAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCAATAAGCGCTAACT > 1:1975050/1‑71 AGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTT < 1:766359/71‑1 AGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTT < 1:4592790/71‑1 GATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTT > 1:2787735/1‑70 ATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAA < 1:549521/71‑1 GCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTA < 1:4514614/62‑1 CCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTT < 1:3091908/65‑1 CTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTT > 1:123518/1‑71 CTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTA < 1:3938433/60‑1 TCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGT > 1:4273726/1‑71 CATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTG < 1:497879/69‑1 ATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGG < 1:2705082/71‑1 ATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTA > 1:1770065/1‑61 GGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTAT < 1:996016/71‑1 GCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTAT < 1:2369641/70‑1 GCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTA < 1:4215229/52‑1 GGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGT < 1:3984544/63‑1 GAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTAT < 1:4404551/67‑1 AGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTG > 1:3098700/1‑60 AGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGG > 1:2956468/1‑57 TTTACAGCCGCCAGGATGGAGGGTGGGAGCGCCCA < 1:594085/35‑1 TTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGA > 1:431903/1‑70 TTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAAC < 1:1351997/45‑1 TACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATA > 1:2904186/1‑71 TACAGCCGCCAGGATGGAGGGTGGGATCGCCCATA > 1:2563246/1‑35 GCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTA > 1:463889/1‑55 CGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTT < 1:737770/40‑1 CCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGA < 1:674064/61‑1 CCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGT < 1:3686741/44‑1 AGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACG > 1:3464683/1‑71 GGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGT > 1:4458134/1‑71 TGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC > 1:1623530/1‑71 GAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGG > 1:3194027/1‑41 TGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATT > 1:1365979/1‑55 CGCCCATAACCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAA > 1:3354578/1‑64 GCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTC < 1:699355/71‑1 GCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCT < 1:1436095/70‑1 GCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCT < 1:4362466/70‑1 CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > 1:3490303/1‑71 CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTC < 1:234748/70‑1 CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGC > 1:2986842/1‑36 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATTTGATTTAACGTGCCGATGAATTACTCTCAC > 1:4598698/1‑71 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > 1:2353824/1‑71 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC < 1:4449882/71‑1 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > 1:3710108/1‑71 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > 1:2905401/1‑71 CATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAt > 1:3877938/1‑69 CATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCT < 1:1472735/67‑1 CATAAGAGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > 1:9652/1‑70 ACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2018637‑2018571 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > W3110S.gb/2519723‑2519791 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |