| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 3,742,938 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 3742938–3744267 | 3744273 | 7–1336 | 81 [0] | [0] 81 | insD–insC | insD,insC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3742937 | 0 (0.000) | 66 (1.610) | 36/84 | NT | 100% | intergenic (‑123/+9) | yieE/insD | predicted phosphopantetheinyl transferase/IS2 element protein |
| ? | W3110S.gb | 3744274 = | 0 (0.000) | intergenic (‑100/+21) | insC/yidZ | IS2 element protein/predicted DNA‑binding transcriptional regulator | |||||
ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3742861‑3742937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACG > W3110S.gb/3744274‑3744343 ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA < 1:1226139/71‑1ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA < 1:3479330/71‑1 TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA < 1:4237659/71‑1 TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA < 1:1856850/71‑1 GGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAA > 1:460644/1‑71 ACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATT < 1:407250/71‑1 ACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGT > 1:132053/1‑71 TAAAGCGGCTAAAAGTTCGATTCAGAGAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT > 1:1973649/1‑64 TAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT > 1:2104521/1‑64 TAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA < 1:1944992/61‑1 AAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCG < 1:150866/69‑1 GCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTT < 1:4559006/71‑1 CGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT < 1:811609/71‑1 CGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT < 1:3743299/71‑1 GCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA < 1:2558929/71‑1 GCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA > 1:2204843/1‑71 TAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCG > 1:1296101/1‑62 AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATT > 1:3506429/1‑55 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:325665/1‑70 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA < 1:2351560/51‑1 AAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGA > 1:794467/1‑71 AAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGA > 1:97020/1‑71 AAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG‑CCCGTTTCATAC < 1:2343600/68‑1 AAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATT < 1:4137238/53‑1 AAGTTCGATTCAGACAAGCTAATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGA > 1:3450702/1‑71 AGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGAT > 1:231165/1‑71 AGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGAT < 1:3462710/71‑1 AGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA > 1:1190854/1‑65 TTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTC < 1:3995994/71‑1 TTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG < 1:2747998/52‑1 CGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTT > 1:4347145/1‑58 GATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT < 1:4540992/71‑1 GATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT < 1:3570217/71‑1 GATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT < 1:488703/71‑1 GATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT < 1:3363928/71‑1 ATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA < 1:3866005/59‑1 ATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA < 1:3847404/59‑1 ATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA < 1:766142/59‑1 CAGACAAGCTTATTACAACTTTTTTAGATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATG > 1:1348787/1‑71 CAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA > 1:3951771/1‑56 CAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTAGCGTTT > 1:3843115/1‑54 CAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT > 1:2252137/1‑42 AGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA > 1:1814803/1‑68 GACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCC < 1:417084/71‑1 GACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA < 1:2854417/54‑1 GACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA < 1:3924466/54‑1 ACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTC > 1:3293189/1‑61 ACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTC > 1:200622/1‑52 ACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT < 1:355001/51‑1 ACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT < 1:1465351/51‑1 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATC < 1:44415/71‑1 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGAC > 1:91006/1‑71 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGAC > 1:1839491/1‑71 TTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGT < 1:3564244/71‑1 TTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT < 1:4412724/42‑1 TACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCG > 1:3265124/1‑69 ACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTA > 1:4162544/1‑70 ACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTA > 1:4157107/1‑70 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAA < 1:1053891/70‑1 AACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAG > 1:1208097/1‑71 AACTTTTTTACATTTTATTGTGAAATTGGGTCGCG < 1:4240035/35‑1 AACTTTTTTACATTTTATTGTGAAATTGGGTCGCG < 1:2668309/35‑1 AACTTTTTTACATTTTATTGTGAAATTGGGTCGCG < 1:3149889/35‑1 ACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA > 1:2959935/1‑52 ACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACG > 1:3483589/1‑43 ACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTT < 1:2180966/36‑1 CTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGT > 1:678762/1‑71 TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATCCC < 1:1966939/54‑1 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAGGATTC < 1:3422017/43‑1 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTT < 1:3590761/70‑1 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTAGGTTATGCCATCGACGCGTAAAGGT < 1:2438259/68‑1 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGA > 1:532183/1‑40 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGA > 1:3898601/1‑40 TTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTT < 1:3914970/70‑1 ACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAAT > 1:253626/1‑71 ACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAA < 1:938501/70‑1 CATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:3279717/1‑52 TTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTT > 1:3819365/1‑71 TTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTT > 1:3556414/1‑71 TTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTT > 1:2502924/1‑71 TTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA > 1:4403285/1‑39 TATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTC > 1:3827614/1‑71 TATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTT > 1:1438583/1‑37 ATTGTGAAATTGGGTCGCGGTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCC > 1:518867/1‑71 TTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTC < 1:4590390/69‑1 GTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAG < 1:3304873/52‑1 GTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCA > 1:1063028/1‑39 ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAC > 1:1039546/1‑69 ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAC > 1:3230382/1‑69 ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTA < 1:4113461/67‑1 TTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAC > 1:497952/1‑68 GGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGA > 1:3450770/1‑70 GGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACG < 1:299363/71‑1 GGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGAC > 1:4124863/1‑70 ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3742861‑3742937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACG > W3110S.gb/3744274‑3744343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |