| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4304456 = | 53 (1.090) | 3 (0.060) | 3/96 | NT | 4.8% | coding (56/1467 nt) | yjcP | predicted outer membrane factor of efflux pump |
| ? | W3110S.gb | 4304483 = | 68 (1.450) | coding (29/1467 nt) | yjcP | predicted outer membrane factor of efflux pump | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACAAGGAGCCACGCAATGATCAATCGTCAACTTTCACGTCTGCTGTTGTGCAGCATTCTCGGCAGCACGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4304526‑4304456‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTGGCGGGCGTTAATGC > W3110S.gb/4304483‑4304552 ACAAGGAGCCACGCAATGATCAATCGTCAACTTTCACGTCTGCTGTTGTGCAGCATTCTCGGCAGCACGAC > 1:1601655/1‑71ACAAGGAGCCACGCAATGATCAATCGTCAACTTTCACGTCTGCTGTTGTGCAGCATTCTCGGCAGCACGAC > 1:1606956/1‑71ACAAGGAGCCACGCAATGATCAATCGTCAACTTTCACGTCTGCTGTTGTGCAGCATTCTCGGCAGCACGAC > 1:2142914/1‑71ACAAGGAGCCACGCAATGATCAATCGTCAACTTTCACGTCTGCTGTTGTGCAGCATTCTCGGCAGCACGAC > 1:2570232/1‑71ACAAGGAGCCACGCAATGATCAATCGTCAACTTTCACGTCTGCTGTTGTGCAGCATTCTCGGCAGCACGAC > 1:2977805/1‑71 AATCGTCAACTTTCACGTCTGCTGTTGTGCAGCATTCTCGGCAGCACGA > 1:3013864/1‑49 GTTGTGCAGCATTCTCGGCAGCACGACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGT > 1:3141296/1‑71 TTGTGCAGCATTCTCGGCAGCACGACAGCAGACGTGAAAGTTGACGATTGATCA > 1:4325675/1‑54 AGCATTCTCGGCAGCACAACAGCAGACGTGAAAGTTGACGATTG < 1:622820/44‑1 ACAGCAGACGTGAAAGTTGACGATTGATCATTGCGT > 1:2437638/1‑36 CAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCTGTGGCGGGCGTTAATGC > 1:2592767/1‑71 CAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTGGCGGGCGTTAATGC < 1:4235253/71‑1 ACAAGGAGCCACGCAATGATCAATCGTCAACTTTCACGTCTGCTGTTGTGCAGCATTCTCGGCAGCACGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4304526‑4304456‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTGGCGGGCGTTAATGC > W3110S.gb/4304483‑4304552 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |