| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 315707 | NA (NA) | 66 (1.350) | 42/100 | NT | 100% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 576911 = | 0 (0.000) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGTT > W3110S.gb/315639‑315776 | cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATa < 1:4280866/71‑1 (MQ=32) cAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATa > 1:282353/1‑69 (MQ=33) aGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATaaa < 1:57817/70‑1 (MQ=37) ggAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGGAGGATCATAAAGTCCt < 1:3313804/70‑1 (MQ=255) tttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATaaa > 1:3787818/1‑58 (MQ=38) tGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATaaa > 1:3339873/1‑56 (MQ=38) tGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTg > 1:1241409/1‑71 (MQ=255) gAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTg < 1:3284660/70‑1 (MQ=255) gAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGt > 1:1541711/1‑71 (MQ=255) cAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCAct > 1:962341/1‑71 (MQ=255) aGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCta > 1:3665311/1‑53 (MQ=255) aGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCActct > 1:3536932/1‑71 (MQ=255) cTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATaaa > 1:951673/1‑43 (MQ=40) tCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTgg > 1:2245482/1‑70 (MQ=255) cGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCa > 1:4038034/1‑71 (MQ=255) cTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTc < 1:1110320/56‑1 (MQ=255) aGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGt < 1:2576313/38‑1 (MQ=255) aGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGt > 1:3305030/1‑69 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATg > 1:2713218/1‑66 (MQ=255) ccTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCa < 1:4354564/71‑1 (MQ=255) cTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCAc < 1:1469452/52‑1 (MQ=255) cTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCa > 1:775756/1‑70 (MQ=255) gtgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCa > 1:2323607/1‑49 (MQ=255) tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTgg < 1:2175255/57‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCa < 1:2792025/64‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCata < 1:3838421/69‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATAtt < 1:2121297/71‑1 (MQ=255) ccATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCa < 1:92781/64‑1 (MQ=255) cATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTc < 1:2937276/42‑1 (MQ=255) cATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcaca > 1:2787208/1‑71 (MQ=255) cATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcaca > 1:2792784/1‑71 (MQ=255) tatTACGTGGGTAGGATCATAAAGTCCTCGGGTCg < 1:565259/35‑1 (MQ=255) tatTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTgg < 1:765726/51‑1 (MQ=255) tatTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATa > 1:245691/1‑71 (MQ=255) atTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATAc > 1:629693/1‑71 (MQ=255) atTACGTGGGTAGGATCATAAAGTCCTAGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATAc > 1:2204763/1‑71 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTcc > 1:1528428/1‑39 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCAc > 1:2293961/1‑41 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCAt > 1:534849/1‑52 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATAtt > 1:167680/1‑63 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATAcc > 1:3226887/1‑71 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTATTg > 1:2898005/1‑48 (MQ=255) aCGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCtt < 1:1183720/43‑1 (MQ=255) gTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCg < 1:1454337/64‑1 (MQ=255) tAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTa > 1:1568011/1‑65 (MQ=255) ggATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGTCATGTCAGCATATTCACATACCGTACCAGCaa < 1:2520229/70‑1 (MQ=255) ggATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCaaa < 1:3398698/71‑1 (MQ=255) ggATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCaaa < 1:1669602/71‑1 (MQ=255) gATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCa < 1:74596/47‑1 (MQ=255) aTCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTca < 1:2116371/52‑1 (MQ=255) aTCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTa < 1:1810532/61‑1 (MQ=255) aTCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTa < 1:1180972/61‑1 (MQ=255) tCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcac > 1:3285642/1‑52 (MQ=255) tCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTca < 1:4582664/51‑1 (MQ=255) tCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGt > 1:1621234/1‑71 (MQ=255) cATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCa < 1:2466895/44‑1 (MQ=255) cATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGtt > 1:3931995/1‑71 (MQ=255) cATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACAAGCAAAAGtt > 1:3491844/1‑71 (MQ=255) | CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGTT > W3110S.gb/315639‑315776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |