| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1209367 = | 13 (0.270) | 29 (0.880) | 22/68 | NT | 78.5% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 7 (0.210) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
Only 100 of 131 total aligned reads displayed.
CTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGC > W3110S.gb/1209297‑1209433 | ttAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTG < 1:1695477‑M1/70‑1 (MQ=255) aaGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTT > 1:3788990‑M1/1‑71 (MQ=255) aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT < 1:2636565‑M1/71‑1 (MQ=255) aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTT < 1:3668146‑M1/70‑1 (MQ=255) aGCCGCAAGAATCCGATTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTT < 1:3863628‑M1/70‑1 (MQ=255) aaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg < 1:3409331‑M1/8‑1 (MQ=255) aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg > 1:1009275‑M1/63‑71 (MQ=255) aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg > 1:4218263‑M1/63‑71 (MQ=255) cccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtttggtag > 1:487031‑M1/59‑67 (MQ=255) cccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgaga > 1:562056‑M1/59‑71 (MQ=255) cccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgaga > 1:3361924‑M1/59‑71 (MQ=255) cccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 1:1952541‑M1/59‑70 (MQ=255) aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG > 1:4174908‑M1/1‑70 (MQ=255) aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG > 1:325380‑M1/1‑70 (MQ=255) cctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAg > 1:1019395‑M1/57‑71 (MQ=255) ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg < 1:4561964‑M1/16‑1 (MQ=255) tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAg < 1:515057‑M1/15‑1 (MQ=255) tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGct < 1:4541691‑M1/71‑3 (MQ=255) tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGct > 1:2154830‑M1/1‑69 (MQ=255) tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGct > 1:1179298‑M1/1‑69 (MQ=255) ggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGga < 1:3939730‑M1/11‑1 (MQ=255) ggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGa < 1:2787533‑M1/17‑1 (MQ=255) gtaaaagcaggaatgatgccatttgcttgttatttcttaattttcataaacgTTGGTTTGGga > 1:85379‑M1/53‑63 (MQ=255) cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct < 1:3699571‑M1/71‑5 (MQ=255) cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct < 1:4391428‑M1/71‑5 (MQ=255) aaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCa < 1:2978091‑M1/20‑1 (MQ=255) tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc < 1:3550896‑M1/71‑7 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGa < 1:3303797‑M1/17‑1 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa > 1:932987‑M1/50‑70 (MQ=255) agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg < 1:3574285‑M1/9‑1 (MQ=255) agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc < 1:3763650‑M1/24‑1 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatt < 1:2969081‑M1/70‑10 (MQ=255) caggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:2125243‑M1/46‑71 (MQ=255) aggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCa > 1:3654666‑M1/45‑71 (MQ=255) ggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 1:3854102‑M1/44‑55 (MQ=255) atatCAAATCGGATGGCACTGTGCAAACGGCTCTCGATAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt < 1:1931378/71‑1 (MQ=255) tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctg < 1:4331991‑M1/71‑15 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATg < 1:3184763‑M1/30‑1 (MQ=255) atgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATg > 1:4012289‑M1/41‑70 (MQ=255) atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATg > 1:1314136/1‑70 (MQ=255) atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:484712‑M1/1‑41 (MQ=255) tgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 1:1029949‑M1/40‑51 (MQ=255) tgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATg < 1:1731186‑M1/30‑1 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG < 1:2827659‑M1/51‑1 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGGGAAGGctctgcattacctgttg < 1:2492794‑M1/70‑18 (MQ=255) aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt > 1:3355625‑M1/1‑52 (MQ=255) gccatttgcttgttatttcttcattttcataaacgTTGGt > 1:327276‑M1/36‑40 (MQ=255) gccatttgcttgttatttcttcattttcataaacgTTGGt > 1:946114‑M1/36‑40 (MQ=255) ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcc > 1:1246375‑M1/1‑48 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc > 1:1998104‑M1/32‑71 (MQ=255) gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg < 1:4419588‑M1/52‑6 (MQ=255) ttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc < 1:475698‑M1/40‑1 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg < 1:2530315‑M1/18‑1 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt > 1:2958061‑M1/30‑70 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa < 1:4172391‑M1/42‑1 (MQ=255) gcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa > 1:942866‑M1/29‑70 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTgg < 1:135880‑M1/9‑1 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgca > 1:561706‑M1/1‑42 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgca > 1:1609564‑M1/1‑42 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttcc < 1:1404739‑M1/71‑31 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt < 1:850460/71‑1 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccg < 1:672848‑M1/71‑32 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccg > 1:2454487‑M1/1‑40 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttcc < 1:4115463‑M1/70‑31 (MQ=255) tatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:291821‑M1/48‑1 (MQ=255) tatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:814056‑M1/48‑1 (MQ=255) gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA > 1:4484369‑M1/1‑36 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgt > 1:3034611‑M1/1‑37 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTc < 1:3428400/47‑1 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:3920273/1‑69 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa > 1:2791630/1‑71 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAAGctctgcattacctgttggtgtcccggttccgt < 1:2062928‑M1/69‑33 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaaa > 1:1461597/1‑43 (MQ=255) ttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACg < 1:4397121‑M1/52‑1 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa > 1:1362458/1‑47 (MQ=255) tcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACg < 1:3879506‑M1/52‑1 (MQ=255) tcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACg > 1:2512707‑M1/19‑70 (MQ=255) cttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCa < 1:583151‑M1/54‑1 (MQ=255) ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa > 1:332130‑M1/17‑58 (MQ=255) ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa > 1:4559723‑M1/17‑58 (MQ=255) tcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa > 1:1971787‑M1/16‑57 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttca < 1:3132815‑M1/71‑41 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcag > 1:321590‑M1/1‑30 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcag > 1:1888867‑M1/1‑30 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttaag > 1:1086663‑M1/1‑29 (MQ=255) attttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg < 1:923457‑M1/58‑1 (MQ=255) tttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt < 1:4153631‑M1/60‑1 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 1:1605293‑M1/61‑1 (MQ=255) tcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 1:1561943‑M1/61‑1 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccact > 1:4203998‑M1/1‑25 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactc < 1:1196470‑M1/70‑48 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgt < 1:3670069‑M1/55‑33 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggt > 1:3027422‑M1/1‑23 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtccc < 1:3248106‑M1/47‑25 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa > 1:451215/1‑70 (MQ=255) aaaCCTTGGTTTGGGAGAAGGctctgcattacctg > 1:2872933‑M1/1‑21 (MQ=255) aaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg > 1:735120/1‑71 (MQ=255) aaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcc < 1:163287‑M1/71‑52 (MQ=255) ccTTGGTTTGGGAGAAGGctctgcattacctgttg > 1:4116900‑M1/1‑18 (MQ=255) gTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:3781379‑M1/2‑35 (MQ=255) | CTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGC > W3110S.gb/1209297‑1209433 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |