| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 46 (0.960) | 30/98 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAG > W3110S.gb/2173497‑2173630 | cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAg > 1:79339/1‑70 (MQ=31) cAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCa > 1:2610877/1‑71 (MQ=34) cAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCa > 1:3094764/1‑71 (MQ=34) cGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATGCCt > 1:3937589/1‑71 (MQ=255) ggAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCtt < 1:2235426/71‑1 (MQ=255) ggAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCtt < 1:1398197/71‑1 (MQ=255) aaaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtt < 1:1721669/71‑1 (MQ=255) aaCAAGAACCTCGCTTAGGCCTGTTTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:1708540/71‑1 (MQ=255) aaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:3123818/71‑1 (MQ=255) aaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:2648811/71‑1 (MQ=255) aCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTg < 1:4321977/71‑1 (MQ=255) aaGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGAc > 1:4022965/1‑71 (MQ=255) aGAACCTCGCTTAGGCCTCTGTCCATATTACGTGGGTAGGATCAGTCAt > 1:4306582/1‑49 (MQ=255) gAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTg > 1:3127130/1‑71 (MQ=255) cTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTTGATCAtttt < 1:2326824/62‑1 (MQ=255) tCGCTTATGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATccc < 1:1439134/46‑1 (MQ=255) tCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTg < 1:966061/62‑1 (MQ=255) tCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTgccgcc > 1:2032959/1‑71 (MQ=255) gCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTgccgc > 1:630996/1‑68 (MQ=255) gCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTgccgc > 1:2511456/1‑68 (MQ=255) ttAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt > 1:2457203/1‑57 (MQ=255) ttAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt > 1:1174386/1‑57 (MQ=255) tAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:2927334/1‑58 (MQ=255) tAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTgcgc > 1:650223/1‑71 (MQ=255) aGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:1414067/1‑57 (MQ=255) aGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTgcgc > 1:2669765/1‑70 (MQ=255) ggCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCg < 1:2069478/43‑1 (MQ=255) ggCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTgc < 1:1439202/67‑1 (MQ=255) tgtgTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:1941084/50‑1 (MQ=255) tgtgTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTgcc < 1:3538430/57‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCAGTCATCCCTTc < 1:3593886/36‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCAGTCATCCCTTCg < 1:4001744/37‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:1232535/1‑50 (MQ=255) tgtCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:2774440/1‑50 (MQ=255) tgtCCAAATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTAtt > 1:588121/1‑67 (MQ=255) tCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtt < 1:2325851/44‑1 (MQ=255) ccATATTACGTGGGTAGGATCAGTCATCCCTTCGTg < 1:2459487/36‑1 (MQ=255) cATATTACGTGGGTAGGATCAGTCATCCCTTCGTg > 1:1679922/1‑35 (MQ=255) cATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt > 1:1596932/1‑44 (MQ=255) cATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtt > 1:2505694/1‑42 (MQ=255) cATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtt > 1:2133260/1‑42 (MQ=255) cATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGtttt < 1:2170727/70‑1 (MQ=255) cATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGtttt < 1:461085/70‑1 (MQ=255) cATATTACGTGGGTAGGATCAGTCACCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGttttt < 1:1842085/71‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:1498978/42‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTg < 1:2687607/43‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTg > 1:3321261/1‑71 (MQ=255) catTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTgcgc < 1:498849/56‑1 (MQ=255) atTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAttt > 1:1976843/1‑40 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt > 1:1298615/1‑40 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:1550792/40‑1 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAttt > 1:2540940/1‑39 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgc > 1:2204938/1‑71 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgc > 1:1957648/1‑71 (MQ=255) aCGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:2169126/1‑40 (MQ=255) cGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:1507275/1‑39 (MQ=255) cGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:4513991/1‑39 (MQ=255) cGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:3467342/1‑39 (MQ=255) cGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcgc < 1:434391/70‑1 (MQ=255) gggTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGtttttt < 1:1686420/62‑1 (MQ=255) ggTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGt < 1:3297881/56‑1 (MQ=255) gTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGc < 1:3305779/71‑1 (MQ=255) ggATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTc > 1:4327684/1‑49 (MQ=255) ggATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAg > 1:174129/1‑71 (MQ=255) cAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTg > 1:4300061/1‑37 (MQ=255) | CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAG > W3110S.gb/2173497‑2173630 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |