| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 42 (0.860) | 338 (8.900) +CGCGTACAACT |
81/78 | NT | 89.4% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 61 (1.250) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 588 total aligned reads displayed.
GGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > W3110S.gb/235976‑236114 | ctacctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCaa < 1:2068101‑M2/3‑1 (MQ=255) gacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGa > 1:1225489‑M2/63‑71 (MQ=255) gctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACa > 1:3252176‑M2/60‑70 (MQ=255) ctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:895356‑M2/13‑1 (MQ=255) ttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCaa > 1:844846‑M2/57‑59 (MQ=255) ttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAAt > 1:1449962‑M2/55‑70 (MQ=255) tcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTg < 1:1762935‑M2/8‑1 (MQ=255) gTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGAcc > 1:1880613/1‑71 (MQ=255) tttAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCg > 1:4302963/1‑71 (MQ=255) cgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGAcc > 1:3909502‑M2/51‑70 (MQ=255) gcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc < 1:4474855‑M2/22‑1 (MQ=255) gcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc < 1:4269061‑M2/22‑1 (MQ=255) tAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGc > 1:3155024/1‑70 (MQ=255) tAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGc > 1:1426699/1‑70 (MQ=255) aactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTa < 1:2010863‑M2/24‑1 (MQ=255) actctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTAt > 1:2283223‑M2/47‑71 (MQ=255) ctctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTAt < 1:1369439‑M2/25‑1 (MQ=255) ctctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATg < 1:1046397‑M2/26‑1 (MQ=255) tctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTa > 1:1311640‑M2/45‑68 (MQ=255) ctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACa > 1:754156‑M2/44‑54 (MQ=255) tctcTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGc < 1:2403609/64‑1 (MQ=255) tctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATg < 1:3205538‑M2/17‑1 (MQ=255) tctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTAt > 1:3583861‑M2/43‑67 (MQ=255) ctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCa > 1:2854426‑M2/42‑71 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg < 1:3510133‑M2/28‑1 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg < 1:3544013‑M2/28‑1 (MQ=255) ctgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCa < 1:78395‑M2/30‑1 (MQ=255) ctgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTg > 1:2232789‑M2/39‑71 (MQ=255) tgtttctccatacccgtttttttggacgcgtacaactCAAGTCt < 1:2736222‑M2/7‑1 (MQ=255) tgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaaa > 1:923051‑M2/38‑52 (MQ=255) gtttctccatacccgtttttttggacgcgtacaactCAAGt > 1:3960983‑M2/37‑41 (MQ=255) gtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAAt > 1:4531157‑M2/37‑52 (MQ=255) gtttctccatacccgtttttttggacgcggacaactCAAGTCTGACATAAATGa < 1:618557‑M2/18‑1 (MQ=255) gtttatccatacccgtttttttggacgcgtacaactCAAGt > 1:1265964‑M2/37‑41 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGt > 1:3024622‑M2/36‑40 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCt < 1:4234441‑M2/7‑1 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCTGATATAAATGACCGCTATGAg < 1:823354‑M2/28‑1 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCTGACa > 1:362934‑M2/36‑46 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCa > 1:3061164‑M2/36‑65 (MQ=255) ttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:2559102‑M2/35‑71 (MQ=255) aGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:1000384/1‑71 (MQ=255) ctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCa > 1:1708231‑M2/33‑62 (MQ=255) aCTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCt < 1:1669253/39‑1 (MQ=255) ccatacccgtttttttggacgcgtacaactCAAGTCt < 1:2109941‑M2/7‑1 (MQ=255) catacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTacac < 1:192900‑M2/42‑1 (MQ=255) catacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa < 1:3839770‑M2/39‑1 (MQ=255) atacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACg > 1:2605220‑M2/29‑71 (MQ=255) tacccgtttttttggacgcgtacaactCAAGTCTGACATAAAt < 1:438182‑M2/16‑1 (MQ=255) tacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCt < 1:2778022‑M2/23‑1 (MQ=255) tacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc < 1:4033918‑M2/44‑1 (MQ=255) tacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:3705960‑M2/28‑71 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCa > 1:2694131‑M2/26‑55 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:3124775‑M2/26‑69 (MQ=255) tAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:2193389/1‑68 (MQ=255) ccgtttttttggacgcgtacaactCAAGTCTGACATaaa > 1:3366224‑M2/25‑39 (MQ=255) ccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAg < 1:1815039‑M2/47‑1 (MQ=255) gtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCaa > 1:265980‑M2/23‑58 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATaa < 1:298901‑M2/14‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGAcc < 1:1072205‑M2/20‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc < 1:1567285‑M2/22‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:565594‑M2/22‑65 (MQ=255) ttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg > 1:1945444‑M2/21‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGc > 1:1967150‑M2/20‑41 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCa > 1:1142073‑M2/20‑65 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg < 1:2132740‑M2/51‑1 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:50956‑M2/20‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:532288‑M2/20‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:2450184‑M2/20‑71 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCa > 1:3662422/1‑49 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg < 1:2175552/70‑1 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:1402507/1‑71 (MQ=255) tttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGtt < 1:4573715‑M2/53‑1 (MQ=255) aTCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtc < 1:1118610/71‑1 (MQ=255) ttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCa > 1:2528322‑M2/17‑46 (MQ=255) ttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCa > 1:2479956‑M2/17‑46 (MQ=255) ttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCa > 1:4086707‑M2/17‑62 (MQ=255) tggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtct < 1:694859‑M2/55‑1 (MQ=255) gacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCg > 1:2903944‑M2/14‑70 (MQ=255) cgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTa < 1:3468387‑M2/60‑1 (MQ=255) cgcgtacaactCAAGTCTGACATAAATAACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTa > 1:412646‑M2/12‑71 (MQ=255) cgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAcc < 1:3937018‑M2/62‑1 (MQ=255) tAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATAc < 1:1790405/69‑1 (MQ=255) gtacaactCAAGTCTTACATAAATGACCGCTATGAGCACTTCAATTa < 1:1520599‑M2/39‑1 (MQ=255) gtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTcgc > 1:3440567‑M2/9‑65 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGGACTGCAATTACACGCCAGATCGTTCTCGCTACcgc < 1:4499795‑M2/64‑2 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:2804286‑M2/34‑1 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:101590‑M2/34‑1 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc < 1:1845387‑M2/64‑2 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCaa > 1:1339841‑M2/6‑41 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:3405042‑M2/6‑46 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:1611975‑M2/6‑46 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGtt > 1:957932‑M2/6‑58 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:646948‑M2/6‑71 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:4171402‑M2/6‑71 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:295978‑M2/6‑71 (MQ=255) aactCAAGTCTGACATAAATGACCGCTATGAGCACTGCa < 1:2351202‑M2/35‑1 (MQ=255) aCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCaa > 1:4429752/1‑40 (MQ=255) actCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:3299845‑M2/4‑44 (MQ=255) ctCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATc < 1:2161853‑M2/50‑1 (MQ=255) tCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATc < 1:376452‑M2/50‑1 (MQ=255) | GGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > W3110S.gb/235976‑236114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |