| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 57 (1.170) | 37/100 | NT | 96.6% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 2 (0.040) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
Only 100 of 118 total aligned reads displayed.
ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAA > W3110S.gb/575930‑576067 | atgatgaaccctgttctatggctccagatgacaaacatgatctgatatcagggacttgttcgcaccttcct > 1:2575741‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:4556876‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1995749‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:4192731‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2659610‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1289214‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1692111‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1640946‑M2/71‑71 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2761374‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2680740‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:3327717‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2220937‑M2/70‑70 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2758878‑M2/69‑69 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1477898‑M2/69‑69 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3164241‑M2/69‑69 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2448777‑M2/69‑69 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:2627990‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:3518696‑M2/4‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:38246‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:3928818‑M2/68‑71 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:3109986‑M2/67‑70 (MQ=255) tgaaccctgttatatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:2697481‑M2/67‑70 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2358007‑M2/2‑1 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt < 1:52984‑M2/5‑1 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:1132146‑M2/61‑66 (MQ=255) ctgttctatggctccagacgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGAt > 1:1884688‑M2/61‑71 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1669746‑M2/1‑1 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:2402092‑M2/60‑62 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATg > 1:421807‑M2/60‑71 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:209153‑M2/1‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1670446‑M2/1‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:4452998‑M2/58‑60 (MQ=255) tctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:685642‑M2/8‑1 (MQ=255) tctatggctccagatgacaaacatgatctcatatcagggacttgatcgcaccttccTTa > 1:523969‑M2/57‑59 (MQ=255) tatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2645408‑M2/2‑1 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:4472436‑M2/54‑56 (MQ=255) ctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:4328843‑M2/2‑1 (MQ=255) ctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcagc < 1:1042903‑M2/22‑1 (MQ=255) ctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcagc < 1:2938372‑M2/22‑1 (MQ=255) ccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2163335‑M2/2‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:4269243‑M2/1‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1160104‑M2/1‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcagcag > 1:3851714‑M2/47‑70 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:768129‑M2/25‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:1922221‑M2/25‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:2179700‑M2/25‑1 (MQ=255) cagatgacaaacatgatctcatatcaaggacttgttcgcaccttccTTAGTACTGATGCAGCTAcagca < 1:2993614‑M2/23‑1 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:369753‑M2/25‑1 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGa < 1:4486253‑M2/10‑1 (MQ=255) atgacaaacttgatctcatatcagggacttgttcgcaccttcct < 1:4249285‑M2/1‑1 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGa > 1:3501999‑M2/44‑53 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAt > 1:1959489‑M2/44‑71 (MQ=255) tgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAtt < 1:639038‑M2/29‑1 (MQ=255) tgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAtt < 1:3187017‑M2/29‑1 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttcctt > 1:1853597‑M2/42‑43 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:1981586‑M2/42‑44 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTg > 1:3941747‑M2/42‑71 (MQ=255) tCTTTATTGTAAATCTCTGCTGCCTGAGCAGACATCGCCATCAGTACTGATGCAGCTACAGCAGAAATTGc < 1:1221333/71‑1 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:315785‑M2/2‑1 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2721016‑M2/2‑1 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTg > 1:2426502‑M2/40‑48 (MQ=255) aaacatgatctgatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:4215664‑M2/39‑65 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttcct < 1:510177‑M2/1‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAc > 1:2341284‑M2/39‑57 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttcctt < 1:4291003‑M2/2‑1 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAc < 1:3304926‑M2/19‑1 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:4315067‑M2/25‑1 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAGt > 1:682285‑M2/37‑41 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACt > 1:3941889‑M2/37‑71 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATT‑CCACTg < 1:2537647‑M2/35‑1 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTa > 1:2890715‑M2/36‑38 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAGTACTGa > 1:310363‑M2/36‑45 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGATACAGCAGAAATTGCCa > 1:2135752‑M2/36‑68 (MQ=255) tgatctcatatcagggacttgttcgcaccttcctt < 1:1674894‑M2/2‑1 (MQ=255) tgatctcatatcagggacttgttcgcaccttcctt < 1:1703341‑M2/2‑1 (MQ=255) tgatctcatatcagggacttgttcgcaccttccTTAg < 1:4343904‑M2/4‑1 (MQ=255) tgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:2902598‑M2/34‑39 (MQ=255) gatctcatatcagggacttgttcgcaccttccTTAg < 1:605441‑M2/4‑1 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAt > 1:3525880‑M2/27‑54 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAttttt > 1:4161125‑M2/27‑71 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt < 1:3289808‑M2/44‑1 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc > 1:3230263‑M2/24‑54 (MQ=255) agggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCAt < 1:4281170‑M2/49‑1 (MQ=255) tGCCTGAGCAGACATCGCCATCAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc < 1:3506334/70‑1 (MQ=255) ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt > 1:2789152‑M2/20‑63 (MQ=255) ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt < 1:1570604‑M2/52‑1 (MQ=255) ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt < 1:714393‑M2/52‑1 (MQ=255) ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt < 1:863159‑M2/52‑1 (MQ=255) cttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:3262444‑M2/25‑1 (MQ=255) cttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt > 1:1289130‑M2/17‑68 (MQ=255) ttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGcc < 1:2573595‑M2/32‑1 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt > 1:1284469‑M2/14‑57 (MQ=255) tcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAt > 1:1257421‑M2/12‑52 (MQ=255) cgcaccttccTTAGTACTGATTCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCttt > 1:3307687‑M2/11‑71 (MQ=255) gcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCttt < 1:3049051‑M2/61‑1 (MQ=255) caccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:1536739‑M2/9‑35 (MQ=255) caccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCttttt < 1:335293‑M2/63‑1 (MQ=255) accttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttttt < 1:4356819‑M2/64‑1 (MQ=255) accttccTTAGTACTGATGCAGCTACAGCAGAAATTGCAACTGTTAATTTTTTCATCGTGAGCCCtttttt > 1:3539786‑M2/8‑71 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGaa > 1:4518752‑M2/4‑71 (MQ=255) | ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAA > W3110S.gb/575930‑576067 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |