| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4547364 = | 41 (0.840) | 7 (0.180) | 7/82 | NT | 17.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 31 (0.780) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
TAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAG > W3110S.gb/4547611‑4547747 | tAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt > 1:4300800/1‑71 (MQ=255)tAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt > 1:445662/1‑71 (MQ=255) caacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCa < 1:3861672/70‑1 (MQ=255) caacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCa < 1:1220260/70‑1 (MQ=255) caacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCAt < 1:3177187/71‑1 (MQ=255) caacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCAt < 1:3171634/71‑1 (MQ=255) aacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATc < 1:2892752/71‑1 (MQ=255) caaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtt > 1:3159365/1‑71 (MQ=255) tttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCttt < 1:1516440‑M2/13‑1 (MQ=255) aaaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTc > 1:517565/1‑65 (MQ=255) aaaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCttt > 1:286076/1‑71 (MQ=255) aaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt < 1:1972814/71‑1 (MQ=255) aaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgggg < 1:1605381/71‑1 (MQ=255) cTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGttt < 1:4144848/57‑1 (MQ=255) gagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAAc > 1:570861‑M2/48‑71 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCttt > 1:3760943/1‑59 (MQ=255) aaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCttt > 1:3513470/1‑58 (MQ=255) aaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtg > 1:2436882/1‑71 (MQ=255) aGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgt > 1:2886722/1‑71 (MQ=255) tGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAg > 1:729865/1‑71 (MQ=255) tacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaa < 1:2603068‑M2/21‑1 (MQ=255) cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg > 1:4497314/1‑52 (MQ=255) cgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgg > 1:955207/1‑71 (MQ=255) tGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg > 1:919692/1‑71 (MQ=255) cTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCAt > 1:221321/1‑38 (MQ=255) cTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTggggg < 1:3694294/48‑1 (MQ=255) tttCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgt < 1:2656560/60‑1 (MQ=255) tttCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTc > 1:2275304/1‑70 (MQ=255) atttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt < 1:3725872‑M2/35‑1 (MQ=255) ttatgatatggacagtttggccccaaATGTTTCATCtt < 1:2408788‑M2/12‑1 (MQ=255) ttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa > 1:4317037‑M2/27‑71 (MQ=255) tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa < 1:3834291/69‑1 (MQ=255) tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa < 1:1652999/69‑1 (MQ=255) ccTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc > 1:394740/1‑71 (MQ=255) tgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTc < 1:292311‑M2/48‑1 (MQ=255) tATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaa < 1:4260984/42‑1 (MQ=255) aGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa < 1:4029657/70‑1 (MQ=255) gTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgt > 1:1678974/1‑43 (MQ=255) gTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTaca < 1:886329/71‑1 (MQ=255) tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa < 1:648187/71‑1 (MQ=255) aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGaaa < 1:281872/35‑1 (MQ=255) gtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaac < 1:660083‑M2/59‑1 (MQ=255) tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca > 1:3798169‑M2/10‑69 (MQ=255) tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca > 1:2459035‑M2/10‑69 (MQ=255) gccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca < 1:4560556‑M2/60‑1 (MQ=255) ccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtg < 1:2616169‑M2/65‑1 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg < 1:4009837‑M2/36‑1 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtgt < 1:314094‑M2/66‑1 (MQ=255) ccaaATGTTTCATCTTTTGGGTGAAAACTGTGCAGTGTTGGGAGTCAAACTCGTTTACAAAACAAAgtgt < 1:4003552‑M2/66‑1 (MQ=255) ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgtgt > 1:316375‑M2/5‑38 (MQ=255) caaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa > 1:1252156‑M2/4‑70 (MQ=255) aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa > 1:1030545‑M2/3‑69 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa > 1:3039598‑M2/2‑57 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtg > 1:2496724‑M2/2‑66 (MQ=255) aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtgt < 1:1066626/66‑1 (MQ=255) aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg > 1:3164496/1‑70 (MQ=255) aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg > 1:1642431/1‑70 (MQ=255) | TAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAG > W3110S.gb/4547611‑4547747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |