| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 62 (1.250) | 46 (1.200) +CGCGTACAACT |
26/76 | NT | 47.3% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 70 (1.410) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
AAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70131‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCAC > W3110S.gb/236044‑236113 ||||||||||| AAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAA‑‑CTCTACTGTTTCTCCATACCCGTTTTTTTGGACG > 1:3440450/1‑71 AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGAC > 1:3397419/1‑71 TTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCG < 1:2831557/71‑1 TTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCG < 1:621833/71‑1 TTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCG < 1:4469207/71‑1 GCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTAC < 1:2369704/71‑1 CGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACA < 1:2205977/71‑1 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAA > 1:4375613/1‑71 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAA < 1:1946509/71‑1 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAA > 1:428572/1‑71 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC < 1:2764342/71‑1 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC < 1:4575861/71‑1 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTACATACCCGTTTTTTTGGACGCGTACAACTC < 1:2973855/71‑1 CCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC > 1:1427791/1‑70 ACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGT > 1:1608697/1‑71 ACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGT > 1:292654/1‑71 ACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGT > 1:4154527/1‑71 ACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGT > 1:256908/1‑71 ACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAG > 1:3914634/1‑70 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA > 1:4379936/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA > 1:1718282/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA > 1:2831781/1‑68 CTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCT < 1:1863927/71‑1 TGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGT < 1:4688918/68‑1 TGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC < 1:2291527/64‑1 TGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC < 1:295762/64‑1 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGT > 1:870967/1‑67 ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:1040723/1‑70 ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:2278114/1‑70 ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:1069619/1‑70 CTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:2759945/71‑1 TTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:2590539/1‑65 TTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC < 1:568077/57‑1 TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAA < 1:3459585/69‑1 TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAA < 1:2350994/69‑1 GCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC > 1:1296356/1‑71 GCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:3684164/71‑1 ACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT < 1:4398938/71‑1 ACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT < 1:1901670/71‑1 CTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATG < 1:1505577/71‑1 CTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG > 1:3634967/1‑71 CTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG > 1:961523/1‑71 CTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG > 1:2897100/1‑71 CTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG > 1:4420927/1‑71 CTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT > 1:1296375/1‑68 CTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGAAATAAATGACCGCTATGAG > 1:1492356/1‑71 TCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG > 1:16010/1‑70 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA > 1:2929402/1‑43 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCA < 1:2977283/42‑1 TACTGTTTCTCCATACCCCTTTTTTTGGACGCGTACAACTCA < 1:175976/42‑1 ACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:3180248/61‑1 GTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC > 1:4755935/1‑70 GTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:4692303/59‑1 TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACT > 1:4133857/1‑67 TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCCGACATAAATGACCGCTAAGAGCACTGCA < 1:1766203/70‑1 TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT < 1:3931955/70‑1 TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT < 1:888532/70‑1 CCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTAC > 1:2243650/1‑70 CATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA < 1:4687001/68‑1 CATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA > 1:1675057/1‑47 TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAA > 1:1215228/1‑42 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAAGAGCACTGCAATTACACGC > 1:4417825/1‑69 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT > 1:3547872/1‑41 CCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT < 1:658994/61‑1 CGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:3275014/1‑67 CGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATT < 1:7922/61‑1 CGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT < 1:2715489/60‑1 GTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAT < 1:4050673/71‑1 GTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAT < 1:4056057/71‑1 TTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCG > 1:4313450/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCA > 1:1594991/1‑65 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCA > 1:4408518/1‑65 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATT < 1:3017853/57‑1 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA > 1:2258153/1‑55 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA > 1:193085/1‑55 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGAACTGCAATTACACGCCAGATCGT > 1:2703181/1‑71 TGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT < 1:2353845/52‑1 GGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC < 1:777864/70‑1 GACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc > 1:3278514/1‑70 GCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTA > 1:1182459/1‑70 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc < 1:2299527/71‑2 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC < 1:4765450/63‑1 CAACTCAAGTCTGACATAAATGCCCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGca < 1:3345975/70‑3 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc > 1:3005559/1‑62 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:3922132/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:2084728/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:1358630/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTACAATTACACGCCAGATCGTTCTCGCTATCGca > 1:166596/1‑68 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCG < 1:1447940/59‑1 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGACAGATCGTTCTCG < 1:1047801/59‑1 TCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAACCAC > 1:4099162/1‑71 TCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAACCAC > 1:990477/1‑71 ||||||||||| AAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70131‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCAC > W3110S.gb/236044‑236113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |