| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 74 (1.490) | 35/98 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
Only 100 of 174 total aligned reads displayed.
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/274304‑274373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > W3110S.gb/576000‑576068 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:3374976/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1840967/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:4025037/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:4046440/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1919449/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:4127113/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:3426395/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:4584634/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:3192619/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:2899715/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:125184/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2854650/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:968173/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1127607/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2317862/1‑71 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1096062/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1990568/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:4744842/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:610365/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:3785118/1‑70 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:4113403/1‑70 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:4275377/70‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:4494909/70‑1 GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:3830515/70‑1 GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:2527289/70‑1 GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:3708954/1‑69 GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:4596999/1‑69 GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:863452/1‑69 GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2840669/1‑69 GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:25528/1‑69 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:3590313/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:97751/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:4747701/70‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1162031/1‑68 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGCGACTTGTTCGCACCTTCCTTAG < 1:1297750/71‑1 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACGTTCCTTAG < 1:1287653/70‑1 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:2935132/70‑1 AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAC > 1:3593654/1‑71 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA > 1:1786730/1‑71 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA > 1:2164760/1‑71 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGC < 1:2151447/70‑1 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGC < 1:2155021/70‑1 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:3914672/59‑1 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1854165/59‑1 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGC > 1:322950/1‑71 TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGC < 1:1584715/67‑1 TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGC < 1:1604536/68‑1 GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1140890/52‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:3713240/71‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT > 1:1655822/1‑54 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:2771066/1‑50 AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAA < 1:2817130/71‑1 GATGACAAACATGATCTCATATCTGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA < 1:651927/71‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1697609/46‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:4803659/45‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:570942/44‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:4339365/1‑44 TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:519685/44‑1 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTG > 1:3018704/1‑71 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA > 1:2496111/1‑68 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC < 1:3381554/71‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:137940/1‑44 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:4580574/41‑1 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:350279/40‑1 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:264449/40‑1 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:2137714/40‑1 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:2685575/39‑1 AAACATGATCTCATATCAGGGACTTGATCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCC < 1:4319338/70‑1 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCAC > 1:1937669/1‑71 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAA < 1:4694636/63‑1 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1680587/38‑1 actTGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACT < 1:2505130/68‑1 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:3275462/44‑1 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA > 1:3651299/1‑42 TCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAT > 1:734101/1‑71 TCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAT > 1:264766/1‑71 TCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT > 1:3198856/1‑58 CTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGT > 1:2335363/1‑66 CTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:577292/1‑60 TCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:3659921/36‑1 ATATCAGGGACTTGTTCGCACCTTCTTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTT < 1:2268724/70‑1 ATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTT > 1:415542/1‑71 ATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTT < 1:2173623/70‑1 ATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAA > 1:1812619/1‑66 TATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTT < 1:2922636/71‑1 TATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAT < 1:2871621/66‑1 TATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGC < 1:4337176/47‑1 TATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA < 1:204108/35‑1 TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG > 1:2270026/1‑47 AGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTT > 1:2811807/1‑67 GACTTGTTCGCACCTTCCTTAGTACTGATGGAGCTACAGCAGA < 1:4254713/43‑1 ACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT > 1:1549965/1‑69 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA > 1:4535535/1‑40 TTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTA < 1:1315824/51‑1 CCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATT < 1:1014999/48‑1 CTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTG < 1:1639443/71‑1 CTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT < 1:2950036/57‑1 CTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT < 1:2879907/57‑1 TTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTG > 1:3915978/1‑70 TTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGA > 1:4585372/1‑58 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/274304‑274373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > W3110S.gb/576000‑576068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |