| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 4,310,365 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 4310365–4311562 | 4311563 | 2–1199 | 67 [0] | [0] 70 | insH–[alsK] | insH,[alsK] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4310364 | 0 (0.000) | 54 (1.180) | 35/90 | NT | 100% | intergenic (‑286/‑69) | yjcS/insH | predicted alkyl sulfatase/IS5 element protein |
| ? | W3110S.gb | 4311564 = | 0 (0.000) | coding (916/1029 nt) | alsK | D‑allose kinase | |||||
TATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4310292‑4310364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAG > W3110S.gb/4311564‑4311629 TATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTT < 1:4050312/70‑1 TATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGC < 1:2073718/70‑1 TTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCAC < 1:1924250/70‑1 GTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAG > 1:4164209/1‑70 CTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTG < 1:3614320/71‑1 CTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTG < 1:1219422/71‑1 TCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGG > 1:4221155/1‑71 TCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGT < 1:2985292/69‑1 TTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCA > 1:2817357/1‑70 TGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAA > 1:2502261/1‑70 TGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAA > 1:2322112/1‑70 AGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGT < 1:4152572/71‑1 GCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT < 1:3021305/71‑1 GCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT < 1:2346191/71‑1 GGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGAT < 1:1917833/71‑1 TTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACA < 1:3589674/43‑1 TTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACA < 1:1019636/43‑1 TTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACA < 1:4571290/43‑1 TGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATG > 1:115242/1‑66 TGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCAC > 1:910704/1‑41 GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGG > 1:2646317/1‑50 GCGCTACTGTGCCAACGTGTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA > 1:2376643/1‑71 CGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA < 1:4465215/70‑1 CGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA < 1:976769/70‑1 CGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA < 1:3426186/70‑1 GCTACTGTGCCAACGTTTTTCTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA < 1:3957829/69‑1 CTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATAT < 1:1961304/71‑1 TACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGA > 1:170429/1‑59 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGC < 1:506238/71‑1 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGC > 1:4011055/1‑71 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTG < 1:1165165/70‑1 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT < 1:72071/55‑1 GTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTG > 1:447549/1‑71 GTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTG > 1:3461301/1‑71 GTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGA > 1:1412152/1‑55 GTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAA > 1:205434/1‑49 TGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGC < 1:1847741/71‑1 TGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTG < 1:460123/70‑1 TGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTG > 1:212403/1‑40 CCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCAC < 1:4518283/71‑1 CCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCA < 1:1591926/70‑1 AACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCC > 1:3209415/1‑71 AACGTTTTACTCATGGGGCTTTAGCACAGAACTGTG > 1:2907469/1‑36 ACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCT > 1:2825409/1‑71 ACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCT < 1:735572/71‑1 CGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAAC < 1:1058196/43‑1 GTTTTACTCATGGGGCTTTAGCACAGAACTTTGGCAAAAAACGTTGA < 1:1499920/47‑1 GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCT > 1:3564631/1‑69 TTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGAT < 1:4274501/47‑1 TTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT < 1:2399499/44‑1 TTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGT < 1:2842108/43‑1 TTTACTCATGGGGCTTTAGCACTGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCA > 1:2581774/1‑63 TTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGAT < 1:2724619/46‑1 TTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCG > 1:4138295/1‑71 TTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCG > 1:1624334/1‑71 TTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATA > 1:2495941/1‑54 TTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGA > 1:577363/1‑44 TCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGC < 1:1973029/68‑1 CATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGAT > 1:4487893/1‑40 ATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTA < 1:175751/71‑1 ATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCAT > 1:3899348/1‑69 GGGGCTTTAGCTCAGAACTGTGGCAAAAAACGTTGATGCGCCAATATT < 1:3652419/48‑1 GGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAG > 1:4671107/1‑71 GGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATT > 1:2157868/1‑47 GGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATT > 1:1349046/1‑47 GGGCTTTAACACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAA < 1:3420330/70‑1 GCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTA < 1:198423/66‑1 AGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAG > 1:1280288/1‑68 TATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4310292‑4310364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAG > W3110S.gb/4311564‑4311629 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |