| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 48 (0.970) | 24 (1.080) +TTTAATATCAGTAAACCGGACATAACC |
16/44 | NT | 51.2% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 54 (1.090) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 126 total aligned reads displayed.
GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGAAA > W3110S.gb/236729‑236868 | gaTTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATaa < 1:3915745/70‑1 (MQ=255) ttGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAAt < 1:715227/70‑1 (MQ=255) cATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGa > 1:4672196/1‑70 (MQ=255) aTGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatagt > 1:165600‑M1/1‑59 (MQ=255) aTGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCt > 1:246406/1‑65 (MQ=255) gAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAgg > 1:1467689/1‑71 (MQ=255) gAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAg > 1:1741859/1‑70 (MQ=255) gAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAg > 1:1844767/1‑70 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaa > 1:1257559‑M1/1‑56 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaa > 1:3373601‑M1/1‑56 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaa > 1:3335089‑M1/1‑56 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaa < 1:4790389‑M1/70‑15 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGATGCCTCTGGCGAGCATAAtttaatatcagt > 1:256647‑M1/1‑56 (MQ=255) gCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaacc < 1:1596670‑M1/71‑18 (MQ=255) cccGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGaaa > 1:4695284/1‑65 (MQ=255) cccGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGaaa > 1:3756518/1‑65 (MQ=255) cccGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGgcgc > 1:2081930/1‑70 (MQ=255) gTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccgga > 1:981900‑M1/1‑50 (MQ=255) gTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaa < 1:2544048/71‑1 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacat > 1:1463319‑M1/1‑47 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacat > 1:4431783‑M1/1‑47 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccgg < 1:635520‑M1/66‑20 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaa > 1:1016964‑M1/1‑47 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatca > 1:649470‑M1/1‑47 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatat < 1:1499680‑M1/55‑9 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaa > 1:2035565‑M1/1‑47 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa > 1:3275566/1‑70 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa > 1:749954/1‑70 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa > 1:2894692/1‑70 (MQ=255) cGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATaaa < 1:2149545/47‑1 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcattaaaccggacataac > 1:26186‑M1/1‑45 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa < 1:1168656/68‑1 (MQ=255) aTCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaa < 1:2424497/65‑1 (MQ=255) tCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAAt < 1:687652/45‑1 (MQ=255) tCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGc > 1:252192/1‑70 (MQ=255) cTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAAt < 1:3317297/44‑1 (MQ=255) tGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaa < 1:2243770/63‑1 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACtt > 1:2308198/1‑71 (MQ=255) cAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaa > 1:4182996‑M1/1‑36 (MQ=255) cAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttaaatatcagtaaac > 1:4657516‑M1/1‑36 (MQ=255) agaagaAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccattaagaa < 1:1922469‑M1/71‑37 (MQ=255) agaagaAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaaga > 1:3463008‑M1/1‑35 (MQ=255) agaagaAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaaga > 1:3457680‑M1/1‑35 (MQ=255) agaagaAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacaaaacccatgaagaa < 1:231709‑M1/71‑37 (MQ=255) agaagaAAGGCGGAAGTTGCCTCTGGCGAGCATAAttt < 1:1890655‑M1/38‑4 (MQ=255) gaagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatc < 1:177621‑M1/43‑10 (MQ=255) gaagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAttt < 1:1061368‑M1/37‑4 (MQ=255) aagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtacaccggacataacccatgaagaaa < 1:2905411‑M1/70‑38 (MQ=255) agaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaa < 1:4076752‑M1/71‑40 (MQ=255) agaaAGGCGGAAGTTGCCTCTGGCGAGCATAAttt < 1:850313‑M1/35‑4 (MQ=255) gaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacat > 1:4806801‑M1/1‑31 (MQ=255) aaGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatat < 1:3721756‑M1/37‑9 (MQ=255) aaGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAtttt > 1:1017840/1‑71 (MQ=255) ggAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctt < 1:2158233‑M1/71‑48 (MQ=255) ggAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGc > 1:4657626/1‑60 (MQ=255) gAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTgcag > 1:2342025/1‑70 (MQ=255) aaGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTgcagca < 1:2898745/71‑1 (MQ=255) aGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaa < 1:4261788‑M1/57‑37 (MQ=255) gTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctttttt > 1:1546447‑M1/1‑20 (MQ=255) ttGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaa > 1:533905‑M1/1‑19 (MQ=255) gCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttga < 1:152846‑M1/70‑54 (MQ=255) gCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttga < 1:4347881‑M1/70‑54 (MQ=255) gCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttga < 1:133569‑M1/70‑54 (MQ=255) gCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGa > 1:3151381/1‑71 (MQ=255) ctctGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGAc < 1:2992907/45‑1 (MQ=255) tctGGCGAGCATAAATACCTGTGAAAGGCGCTaaa < 1:1033988/35‑1 (MQ=255) tctGGCGAGCATAAATACCTGTGAAAGGCGCTaaa < 1:377447/35‑1 (MQ=255) ctGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatc > 1:4474437‑M1/1‑13 (MQ=255) ctGGCGAGCATAAtttaatatcagtaaaccggacataaccca > 1:256109‑M1/1‑13 (MQ=255) ctGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa > 1:307594/1‑36 (MQ=255) ctGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa > 1:1502930/1‑36 (MQ=255) ctGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTc > 1:4727472/1‑70 (MQ=255) tGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtg > 1:16201‑M1/1‑12 (MQ=255) tGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttga < 1:4572753‑M1/65‑54 (MQ=255) tGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTc < 1:1876795/69‑1 (MQ=255) ggCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGa < 1:4396915/40‑1 (MQ=255) ggCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGa < 1:1453723/40‑1 (MQ=255) gCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgctcttttttgaagtggg < 1:3670857‑M1/69‑60 (MQ=255) gCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtggg < 1:735952‑M1/69‑60 (MQ=255) gCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCaaaa < 1:131298/71‑1 (MQ=255) gCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCaa < 1:3318074/69‑1 (MQ=255) gCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCaa < 1:4004585/69‑1 (MQ=255) cGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcag < 1:3063638‑M1/71‑63 (MQ=255) gAGCATAAtttaatatcagtaaaccggacataacc < 1:1121968‑M1/35‑28 (MQ=255) gAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCaa > 1:750489/1‑67 (MQ=255) aGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcaggg > 1:3149711‑M1/1‑7 (MQ=255) aGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCaaa < 1:4286512/58‑1 (MQ=255) cATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGAt > 1:2890223/1‑69 (MQ=255) tAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggc > 1:1136635‑M1/1‑3 (MQ=255) tAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttt < 1:129491‑M1/51‑49 (MQ=255) tAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttt < 1:1417960‑M1/51‑49 (MQ=255) tAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTg < 1:4077469/36‑1 (MQ=255) tAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGa > 1:86453/1‑57 (MQ=255) aatttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggca < 1:1374585‑M1/70‑69 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggcaag < 1:2805731‑M1/71‑71 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggcaag > 1:354692‑M1/1‑1 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggcaa < 1:1215335‑M1/70‑70 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggcaa < 1:1266270‑M1/70‑70 (MQ=255) aaTACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGaaa < 1:2426422/71‑1 (MQ=255) aaTACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGaa > 1:2191815/1‑70 (MQ=255) | GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGAAA > W3110S.gb/236729‑236868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |