| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 713954 | 74 (1.490) | 77 (1.550) | 39/98 | NT | 51.3% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 72 (1.450) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
Only 100 of 192 total aligned reads displayed.
TGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTG > W3110S.gb/713884‑714022 | tGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaa < 1:1675464/71‑1 (MQ=255) aTCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAc < 1:1408562‑M1/70‑2 (MQ=255) tCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAAc > 1:1024875/1‑71 (MQ=255) tCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAAc > 1:1825815/1‑71 (MQ=255) gAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggct > 1:1947472‑M1/1‑66 (MQ=255) aaCACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctg < 1:3239593‑M1/71‑7 (MQ=255) atcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatt < 1:13411‑M1/71‑12 (MQ=255) atcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCa > 1:1206910/1‑69 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaa < 1:2649335/71‑1 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatg < 1:3847680‑M1/71‑16 (MQ=255) gCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatg < 1:637382‑M1/70‑16 (MQ=255) cAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgag < 1:2222553‑M1/71‑18 (MQ=255) gTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggac < 1:590425/71‑1 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa < 1:4050890‑M1/64‑14 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca < 1:3785023/71‑1 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca > 1:3086397‑M1/1‑49 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatt < 1:2373348‑M1/60‑12 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca > 1:455715/1‑69 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatac > 1:4420308‑M1/1‑47 (MQ=255) gCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacc > 1:4365323‑M1/1‑46 (MQ=255) gCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc > 1:4415718/1‑70 (MQ=255) gCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc > 1:3301903/1‑70 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:898925/1‑71 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:948599/1‑71 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:2290329/1‑71 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:2237406/1‑71 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca < 1:991852‑M1/65‑22 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggacaaag < 1:154821/67‑1 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAAt < 1:4244859/71‑1 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatt < 1:4111889‑M1/53‑12 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgag > 1:4185691‑M1/1‑40 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGc > 1:3672854/1‑70 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg < 1:4045433‑M1/70‑32 (MQ=255) cggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:2695318‑M1/45‑8 (MQ=255) cggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:4538443‑M1/45‑8 (MQ=255) ggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggat < 1:3335755‑M1/71‑35 (MQ=255) cggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCca > 1:46147/1‑71 (MQ=255) ggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccca < 1:4396394‑M1/61‑28 (MQ=255) ggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCcac < 1:112285/71‑1 (MQ=255) gAATTGATTGAGTAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccca < 1:3724288‑M1/60‑28 (MQ=255) gAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc < 1:863616/57‑1 (MQ=255) aaTTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagctc < 1:2052841‑M1/71‑40 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga > 1:2920542‑M1/1‑31 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATTCACAAt < 1:212769/71‑1 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAAt < 1:2221494/71‑1 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATc > 1:1555475/1‑71 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:675502‑M1/70‑43 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:4285431‑M1/70‑43 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaat > 1:2345639‑M1/1‑28 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg < 1:4084355‑M1/67‑41 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg < 1:3558599‑M1/67‑41 (MQ=255) ttgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:3492348‑M1/68‑43 (MQ=255) ttgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggacaaag < 1:2007795/49‑1 (MQ=255) gagaAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:1318810/1‑50 (MQ=255) gagaAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCa < 1:760394/70‑1 (MQ=255) agaAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga < 1:4015778‑M1/56‑34 (MQ=255) gaAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcc > 1:4739155‑M1/1‑22 (MQ=255) aGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca > 1:941438‑M1/1‑20 (MQ=255) gTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAAt < 1:601666/58‑1 (MQ=255) tttGCGGAACTATCTAAAACGTTGCAgacaaaggaca < 1:2325807/37‑1 (MQ=255) tGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:2523843/1‑41 (MQ=255) tGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATc > 1:4380223/1‑56 (MQ=255) gCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggat < 1:1989011‑M1/48‑35 (MQ=255) gCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggat < 1:4123732‑M1/48‑35 (MQ=255) ggAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:244964‑M1/1‑12 (MQ=255) ggAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac < 1:1921903/71‑1 (MQ=255) gAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCa > 1:4469699/1‑57 (MQ=255) aaCTATCTAAcggctgaaattaatgaggtcataccc < 1:115425‑M1/36‑27 (MQ=255) aaCTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:2590101/1‑36 (MQ=255) aaCTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac > 1:2432467/1‑69 (MQ=255) cTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:2480025‑M1/50‑43 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGc < 1:2422631/38‑1 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATc > 1:4399418/1‑42 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCcac < 1:468175/45‑1 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAAc > 1:1139042/1‑61 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaa > 1:500929/1‑69 (MQ=255) tATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCg < 1:3015130/49‑1 (MQ=255) aTCTAAAACGTTGCAGACAAAGGACAAAGCAATGTCAATCCACAATCGTGCAGGCCAACCTGCacaaca > 1:721324/1‑69 (MQ=255) aTCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCa > 1:3178324/1‑52 (MQ=255) aTCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAgg > 1:3462176/1‑54 (MQ=255) aTCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaaca > 1:3949920/1‑69 (MQ=255) aTCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGAGCAg > 1:1086369/1‑53 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaa < 1:2537570‑M1/70‑66 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATc < 1:1073909/39‑1 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCcac < 1:1187595/42‑1 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACaga < 1:2060396/70‑1 (MQ=255) cTAAAACGTTGCATACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCa < 1:4670484/55‑1 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:4701830‑M1/1‑3 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatggatagttcg > 1:4645013‑M1/1‑3 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatggatagt > 1:617855‑M1/1‑3 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatggatagt > 1:4336862‑M1/1‑3 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGca > 1:1373229/1‑61 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGca > 1:977738/1‑61 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaac > 1:2800979/1‑65 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaac > 1:2377426/1‑65 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaat < 1:1688763‑M1/69‑69 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:3204205‑M1/43‑43 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgtt > 1:2198592‑M1/1‑1 (MQ=255) aaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACaga > 1:3306139/1‑66 (MQ=255) aaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGtg < 1:2862424/69‑1 (MQ=255) | TGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTG > W3110S.gb/713884‑714022 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |