| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2412225 | NA (NA) | 74 (1.490) | 34/98 | NT | 92.5% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | W3110S.gb | = 3748807 | 6 (0.120) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
Only 100 of 102 total aligned reads displayed.
AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGC > W3110S.gb/2412159‑2412294 | aaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaa < 1:108550/70‑1 (MQ=35)aaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaa > 1:4434039/1‑70 (MQ=35) aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa > 1:4009407/1‑70 (MQ=37) cAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa > 1:4723043/1‑69 (MQ=37) aGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAg > 1:4732662/1‑71 (MQ=40) aGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAg > 1:2795866/1‑71 (MQ=40) gAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc > 1:2601334/1‑71 (MQ=255) gCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGAc > 1:3747846/1‑71 (MQ=255) gCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGAc > 1:193762/1‑71 (MQ=255) ccACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACt < 1:2582709/71‑1 (MQ=255) aCTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTca < 1:858992/71‑1 (MQ=255) aCTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTca > 1:3947470/1‑71 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaa < 1:520619/58‑1 (MQ=35) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaa < 1:3821869/58‑1 (MQ=35) ggAGCACCTCTAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaa < 1:4266146/59‑1 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaa < 1:1432174/59‑1 (MQ=40) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAg < 1:1410101/61‑1 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCAGAt > 1:1639215/1‑71 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAt > 1:2697620/1‑71 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAt > 1:1981838/1‑71 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca < 1:2284869/69‑1 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTcc > 1:1080636/1‑71 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTcc < 1:3687655/71‑1 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTca < 1:2075240/61‑1 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCg < 1:2842277/71‑1 (MQ=255) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTg < 1:156162/65‑1 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa > 1:4470458/1‑55 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa > 1:4558218/1‑55 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa > 1:3531897/1‑55 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:1461571/1‑70 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:2567707/1‑70 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:1235753/52‑1 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:77187/1‑69 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta < 1:2838455/71‑1 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta > 1:4508180/1‑71 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta > 1:170303/1‑71 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta > 1:1373722/1‑71 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:1288995/71‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:3681466/71‑1 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATaa > 1:1404627/1‑71 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACCaaa < 1:2404989/38‑1 (MQ=40) atcatACACTAAATCAGTAAGTTGGCAGCAACACCAAAAAAGc > 1:3584229/1‑43 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg > 1:2422746/1‑70 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg > 1:4768900/1‑70 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg > 1:36637/1‑70 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCaaa < 1:2353341/35‑1 (MQ=40) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAg > 1:3718085/1‑39 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAg > 1:674479/1‑39 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa > 1:2487111/1‑42 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTca > 1:3857401/1‑46 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTca > 1:313099/1‑46 (MQ=255) tACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt < 1:4449842/56‑1 (MQ=255) tACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg > 1:3040090/1‑70 (MQ=255) tACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg > 1:3307273/1‑70 (MQ=255) acaaTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:673771/58‑1 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca < 1:2796064/42‑1 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATaa > 1:1474914/1‑56 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt < 1:4287732/70‑1 (MQ=255) aaaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGc > 1:643574/1‑58 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTa > 1:3624779/1‑65 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca < 1:1721158/70‑1 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca < 1:536197/70‑1 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca < 1:2311658/70‑1 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca < 1:178851/70‑1 (MQ=255) aGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg < 1:736165/59‑1 (MQ=255) aGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATTACAGaa < 1:2970/71‑1 (MQ=255) aGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa < 1:414078/71‑1 (MQ=255) aGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa < 1:3639808/71‑1 (MQ=255) gTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAtt > 1:274055/1‑37 (MQ=255) tAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg < 1:2681280/54‑1 (MQ=255) aaGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:3941225/1‑70 (MQ=255) aaGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:2545350/1‑70 (MQ=255) aGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatata < 1:744472/71‑1 (MQ=255) gTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg < 1:3378977/51‑1 (MQ=255) gTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg < 1:1191760/51‑1 (MQ=255) ttGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATc < 1:2974092/71‑1 (MQ=255) tGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCt > 1:243144/1‑71 (MQ=255) ggCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCt < 1:4088000/70‑1 (MQ=255) gcagcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt < 1:4000959/70‑1 (MQ=255) gcagcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt < 1:2611377/70‑1 (MQ=255) cagcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCa < 1:2005388/71‑1 (MQ=255) gcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAgg > 1:1149368/1‑71 (MQ=255) caTCACCAAAAACGCGACTCACATTGTTCCGTtat < 1:1882790/35‑1 (MQ=255) caTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATc < 1:45378/52‑1 (MQ=255) caTCACCAAAAAAGCGACTCACATTCTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAgg > 1:228267/1‑70 (MQ=255) aTCACCAAAAAAGCTACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGa < 1:3177315/71‑1 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATaa > 1:3309636/1‑36 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa < 1:1777129/57‑1 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt < 1:2163849/65‑1 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAggg < 1:4001252/70‑1 (MQ=255) tCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGa < 1:3323571/48‑1 (MQ=255) tCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAggg < 1:3590731/69‑1 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGTGATc < 1:2043250/70‑1 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg > 1:2760432/1‑71 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg > 1:2043013/1‑71 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg > 1:2181060/1‑71 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg > 1:3708345/1‑71 (MQ=255) ccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCAAAGAATATATCTTCAGGGATCGc < 1:1143268/71‑1 (MQ=255) cAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa < 1:4241972/52‑1 (MQ=255) cAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt < 1:1802748/60‑1 (MQ=255) | AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGC > W3110S.gb/2412159‑2412294 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |