| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4547372 | 30 (0.600) | 8 (0.200) | 7/80 | NT | 26.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 19 (0.470) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
AGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGC > W3110S.gb/4547303‑4547442 | agaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAt < 1:549984‑M1/71‑2 (MQ=255) gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa < 1:841772/71‑1 (MQ=255) gagGTTTGATTTAGCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTg < 1:519581/71‑1 (MQ=255) gtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTc > 1:4445940‑M1/55‑70 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcataga < 1:4436622‑M1/71‑15 (MQ=255) ttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCa > 1:1339570/1‑70 (MQ=255) ttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCa > 1:2709986/1‑70 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata < 1:1101452/70‑1 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata < 1:118460/70‑1 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata < 1:2889324/70‑1 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata < 1:4007988/70‑1 (MQ=255) ttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa < 1:3518397‑M1/27‑1 (MQ=255) aCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaa < 1:4269876/71‑1 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaat < 1:555791/71‑1 (MQ=255) ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc < 1:867025/58‑1 (MQ=255) ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagca > 1:3299465‑M1/1‑48 (MQ=255) ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:3593957/68‑1 (MQ=255) gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcg > 1:2028750‑M1/1‑46 (MQ=255) gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata < 1:2029600/62‑1 (MQ=255) ccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaataa < 1:4579025‑M1/30‑1 (MQ=255) ccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTa < 1:2586301‑M1/34‑1 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcg < 1:4785947‑M1/71‑28 (MQ=255) aacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACg < 1:3396030‑M1/36‑1 (MQ=255) cactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCata < 1:2275705‑M1/25‑1 (MQ=255) cactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:4197848‑M1/38‑1 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcata < 1:3964677‑M1/54‑13 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata < 1:936399/51‑1 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa > 1:3259058/1‑49 (MQ=255) ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaat < 1:2701789/55‑1 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAAc > 1:1161933/1‑37 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAAc > 1:4318652/1‑37 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc < 1:1096510/70‑1 (MQ=255) ttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc < 1:2758389‑M1/47‑1 (MQ=255) tttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc < 1:776450‑M1/47‑1 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa > 1:1004624/1‑52 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc < 1:3092695/67‑1 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc < 1:4476467/67‑1 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCAATATCataaataa > 1:2350279/1‑52 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataa < 1:3043698‑M1/26‑1 (MQ=255) aaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttttt > 1:365772‑M1/1‑30 (MQ=255) aaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttttt > 1:369808‑M1/1‑30 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa < 1:3276405‑M1/56‑1 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa < 1:4529098‑M1/56‑1 (MQ=255) aataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc > 1:3674849/1‑57 (MQ=255) aataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa > 1:1312774/1‑70 (MQ=255) ataCAAGACAATTGGGGCCAAACTGTCCATATCataaa < 1:4738568/38‑1 (MQ=255) taCAAGACAATTGGGGCCAAACTGTCCATATCataaa < 1:3627788/37‑1 (MQ=255) taCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat > 1:3848423/1‑69 (MQ=255) aCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttg > 1:3152527‑M1/1‑18 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCataaat < 1:2943887/37‑1 (MQ=255) tgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat < 1:1166711‑M1/61‑1 (MQ=255) cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa < 1:1445744/71‑1 (MQ=255) aaGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa > 1:3419588/1‑70 (MQ=255) acatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:807106‑M1/38‑1 (MQ=255) aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt < 1:4548616/44‑1 (MQ=255) aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa < 1:3063078/58‑1 (MQ=255) aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa < 1:2716791/58‑1 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggctta < 1:1871844‑M1/68‑59 (MQ=255) TGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa < 1:608732‑M1/70‑1 (MQ=255) GGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc < 1:3758217‑M1/70‑1 (MQ=255) GGGCCAAACTGTCCATATCATAAATAAGTTACGTAttttt < 1:3004070‑M1/40‑1 (MQ=255) GGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACa > 1:4499250‑M1/1‑70 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa < 1:138378‑M1/54‑1 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaa > 1:3585719‑M1/1‑53 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa > 1:3154718‑M1/1‑71 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa > 1:3772718‑M1/1‑71 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa > 1:4066516‑M1/1‑71 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaa > 1:273871‑M1/1‑70 (MQ=255) GCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc > 1:2637490‑M1/1‑42 (MQ=255) CCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa > 1:2366783‑M1/1‑52 (MQ=255) CAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa < 1:1261350‑M1/64‑1 (MQ=255) attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggctta < 1:3886371‑M1/59‑59 (MQ=255) AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGc > 1:1377256‑M1/1‑71 (MQ=255) AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGc > 1:3220426‑M1/1‑71 (MQ=255) | AGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGC > W3110S.gb/4547303‑4547442 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |