| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 56 (1.150) | 34/96 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 200 total aligned reads displayed.
GGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACC > W3110S.gb/3920213‑3920350 | ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:209128‑M2/1‑69 (MQ=255)agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacactt > 1:3903113‑M2/66‑69 (MQ=255) gACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga < 1:898088‑M2/71‑4 (MQ=255) ccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:2239803‑M2/63‑71 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt < 1:74649‑M2/10‑4 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt < 1:4356616‑M2/10‑1 (MQ=255) cTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctt > 1:1769472‑M2/1‑64 (MQ=255) tttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctta < 1:431297‑M2/71‑9 (MQ=255) gaacaatttgaaaacaagaccctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:2135007‑M2/60‑68 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:1646433‑M2/71‑11 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:629454‑M2/71‑11 (MQ=255) caatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATc < 1:3226285‑M2/7‑1 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCa < 1:2648694‑M2/17‑1 (MQ=255) tCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:2024186‑M2/69‑17 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc < 1:695704‑M2/66‑15 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:2756615‑M2/24‑1 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:2346858‑M2/24‑1 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:3031742‑M2/1‑50 (MQ=255) aagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:2851146‑M2/45‑70 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggccac < 1:1749714‑M2/71‑27 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac < 1:2164348‑M2/71‑27 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcACTCATCTTTAGAGCCATCGTCAGGAGtga > 1:163937‑M2/42‑71 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtga > 1:4533377‑M2/42‑71 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatcacac < 1:4612694‑M2/4‑1 (MQ=255) tGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggc < 1:2446239‑M2/71‑32 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:640598‑M2/37‑62 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:937709‑M2/37‑62 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag > 1:4005503‑M2/36‑47 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaa < 1:806572‑M2/34‑1 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggct > 1:212484‑M2/1‑38 (MQ=255) aaCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga < 1:4109205‑M2/40‑4 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt > 1:1053028‑M2/1‑35 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACTAACACtg > 1:1575917‑M2/1‑33 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:684776‑M2/1‑33 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:2000354‑M2/1‑32 (MQ=255) tgtgtccatattacgtgggtaggatcACACATCtt < 1:2057846‑M2/9‑1 (MQ=255) tgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:3468303‑M2/24‑1 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagt < 1:4462524‑M2/70‑41 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:2285834‑M2/49‑20 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa > 1:1282683‑M2/1‑29 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagt < 1:4662503‑M2/49‑21 (MQ=255) gtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtga > 1:4517586‑M2/26‑55 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTg > 1:2367883‑M2/25‑71 (MQ=255) gtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaa > 1:1789392‑M2/24‑57 (MQ=255) cTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaac < 1:812295‑M2/71‑45 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt < 1:2666677‑M2/46‑1 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:3537393‑M2/23‑70 (MQ=255) ccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:439037‑M2/24‑1 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactc > 1:191548‑M2/1‑24 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg > 1:598639‑M2/21‑71 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg > 1:4320966‑M2/21‑71 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatga > 1:2921182‑M2/18‑50 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGt > 1:662565‑M2/18‑71 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATc < 1:1258657‑M2/19‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATc < 1:881383‑M2/19‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg > 1:3060995‑M2/17‑40 (MQ=255) gCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag > 1:1405259‑M2/1‑20 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:53877‑M2/29‑1 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:3598894‑M2/29‑1 (MQ=255) gtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat > 1:4339825‑M2/13‑43 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga > 1:394301‑M2/1‑16 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggaca > 1:620155‑M2/1‑16 (MQ=255) tgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:2701255‑M2/24‑1 (MQ=255) aaGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgag > 1:135677‑M2/1‑14 (MQ=255) aaGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa < 1:274287‑M2/48‑35 (MQ=255) aaGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa < 1:197119‑M2/48‑35 (MQ=255) aaGTGTACGAACACtgatcttacccagcaatagtggacacg < 1:3205692‑M2/41‑28 (MQ=255) tgtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:39581‑M2/1‑11 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaac < 1:4181481‑M2/53‑45 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtga < 1:4780255‑M2/47‑39 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGtga > 1:4234546‑M2/6‑35 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:2940870‑M2/67‑1 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:826636‑M2/67‑1 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:3751232‑M2/71‑65 (MQ=255) gAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt > 1:3333333‑M2/1‑6 (MQ=255) atcactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcaca > 1:47913‑M2/3‑5 (MQ=255) atcactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcaca > 1:1131713‑M2/3‑5 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca < 1:2416466‑M2/57‑54 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat < 1:1011483‑M2/70‑68 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat < 1:1005862‑M2/70‑68 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt < 1:4384974‑M2/61‑59 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt < 1:3669880‑M2/61‑59 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt < 1:260643‑M2/61‑59 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:152687‑M2/1‑3 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:1628908‑M2/1‑3 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaac < 1:1146448‑M2/47‑45 (MQ=255) cacaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTg > 1:3297662/1‑46 (MQ=255) cacaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAc < 1:2319229/58‑1 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatga < 1:1936430‑M2/71‑70 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatg > 1:2465915‑M2/1‑2 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaact < 1:2963408‑M2/47‑46 (MQ=255) acaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:1860464/65‑1 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatga < 1:437803‑M2/70‑70 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatga < 1:3343994‑M2/70‑70 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:1059813‑M2/1‑1 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtc < 1:4705885‑M2/53‑53 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagt > 1:280249‑M2/1‑1 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaa > 1:2563015‑M2/1‑1 (MQ=255) caTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCa > 1:1877239/1‑58 (MQ=255) caTCTTCAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCa > 1:253150/1‑58 (MQ=255) | GGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACC > W3110S.gb/3920213‑3920350 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |