| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 71 (1.460) | 36/96 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 184 total aligned reads displayed.
GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA > W3110S.gb/3920208‑3920346 | gcctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:2653612‑M2/1‑1 (MQ=255)gcctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:4675710‑M2/1‑1 (MQ=255) cctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcac < 1:3923161‑M2/2‑1 (MQ=255) cctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcac < 1:3340790‑M2/2‑1 (MQ=255) cctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca > 1:1464792‑M2/70‑70 (MQ=255) ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:209128‑M2/1‑69 (MQ=255) ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:2294986‑M2/1‑69 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacactt > 1:3903113‑M2/66‑69 (MQ=255) gACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga < 1:898088‑M2/71‑4 (MQ=255) acacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga < 1:2585663‑M2/70‑4 (MQ=255) ccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:3424225‑M2/63‑71 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt < 1:74649‑M2/10‑4 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt < 1:4352725‑M2/10‑1 (MQ=255) cTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctt > 1:1769472‑M2/1‑64 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:118179‑M2/1‑1 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:629454‑M2/71‑11 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:1646433‑M2/71‑11 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt > 1:3496330‑M2/53‑62 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca > 1:884811‑M2/52‑52 (MQ=255) cTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagca < 1:4387269‑M2/70‑16 (MQ=255) tCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:2024186‑M2/69‑17 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc < 1:695704‑M2/66‑15 (MQ=255) gTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag > 1:4371928‑M2/1‑51 (MQ=255) gTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag > 1:1873476‑M2/1‑51 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:2756615‑M2/24‑1 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:1030092‑M2/1‑50 (MQ=255) aagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACTCATCTTTAGAGCCATCGTCAGGAg < 1:2451043‑M2/27‑1 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt > 1:3221018‑M2/43‑70 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggccac < 1:1749714‑M2/71‑27 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac < 1:2164348‑M2/71‑27 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGAGTACGAACAC < 1:235966‑M2/45‑1 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatcacac < 1:2194936‑M2/4‑1 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:3011199‑M2/1‑1 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:1058603‑M2/1‑41 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcaca < 1:1953192‑M2/3‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcaca < 1:4528140‑M2/3‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcaca < 1:1268249‑M2/3‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatca > 1:3197161‑M2/38‑38 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatg > 1:1640016‑M2/38‑69 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:937709‑M2/37‑62 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:2113516‑M2/37‑71 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag > 1:4005503‑M2/36‑47 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag > 1:4671999‑M2/36‑47 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaa < 1:806572‑M2/34‑1 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata < 1:651405‑M2/56‑19 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTATACGAACACtgatcttacccagcaata < 1:3501246‑M2/56‑19 (MQ=255) aaCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga < 1:3708218‑M2/40‑4 (MQ=255) aaCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga < 1:4109205‑M2/40‑4 (MQ=255) taggcctgtgtccatattacgtgggtaggatcacac > 1:4635678‑M2/33‑36 (MQ=255) aCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:2127192‑M2/45‑10 (MQ=255) gcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:4319454‑M2/24‑1 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACTAACACtg > 1:1575917‑M2/1‑33 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:684776‑M2/1‑33 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:2871117‑M2/1‑33 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:2000354‑M2/1‑32 (MQ=255) tgtgtccatattacgtgggtaggatcACACATCtt < 1:2057846‑M2/9‑1 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagt < 1:4462524‑M2/70‑41 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa > 1:1282683‑M2/1‑29 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagt < 1:237109‑M2/49‑21 (MQ=255) gtgtccatattacgtgggtaggatcACACATCTTTag > 1:3193096‑M2/26‑37 (MQ=255) gtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtga > 1:837481‑M2/26‑55 (MQ=255) gtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtga > 1:4517586‑M2/26‑55 (MQ=255) gtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaa > 1:1789392‑M2/24‑57 (MQ=255) cTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaac < 1:4542578‑M2/71‑45 (MQ=255) cTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaac < 1:808686‑M2/71‑45 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt < 1:2666677‑M2/46‑1 (MQ=255) tGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaact < 1:4268464‑M2/71‑46 (MQ=255) tGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaac < 1:2829959‑M2/70‑45 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactc > 1:191548‑M2/1‑24 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg < 1:2242859‑M2/51‑1 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg > 1:598639‑M2/21‑71 (MQ=255) atattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGc < 1:2759650‑M2/52‑1 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatga > 1:2325115‑M2/18‑50 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATc < 1:1258657‑M2/19‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:2424383‑M2/17‑71 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:634582‑M2/17‑71 (MQ=255) gCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag > 1:1405259‑M2/1‑20 (MQ=255) tacgtgggtaggatcACACATATTTAGAGCCATCGTCAGGa > 1:2553984‑M2/16‑41 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:53877‑M2/29‑1 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:3598894‑M2/29‑1 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga > 1:394301‑M2/1‑16 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggaca > 1:620155‑M2/1‑16 (MQ=255) aaGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgag > 1:135677‑M2/1‑14 (MQ=255) aaGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa < 1:274287‑M2/48‑35 (MQ=255) aaGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa < 1:197119‑M2/48‑35 (MQ=255) tgtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:39581‑M2/1‑11 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:3301561‑M2/64‑1 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:2645598‑M2/64‑1 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:1920825‑M2/64‑1 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaa < 1:4322771‑M2/53‑44 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaac < 1:4181481‑M2/53‑45 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtga < 1:4780255‑M2/47‑39 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGtga > 1:4234546‑M2/6‑35 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTa > 1:115255‑M2/6‑71 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:2940870‑M2/67‑1 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:823953‑M2/67‑1 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:44372‑M2/67‑1 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:3751232‑M2/71‑65 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:1011475‑M2/71‑65 (MQ=255) atcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:305830‑M2/67‑1 (MQ=255) | GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA > W3110S.gb/3920208‑3920346 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |