| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 7063 | 16 (0.590) | 12 (0.480) +GATT |
6/90 | NT | 54.3% | coding (897/1431 nt) | yaaJ | predicted transporter |
| ? | W3110S.gb | = 2564144 | 6 (0.220) | coding (1397/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase | |||||
TAAAAATGCCAATCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/7047‑7063‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGCAATGTATATCAGTTTAAG < W3110S.gb/2564144‑2564081 |||| gAAAAATGCCAATCATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGCAATG > 1:1292634/2‑71gAAAAATGCCAATCATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGCAATG > 1:2331118/2‑71 AAAAATGCCAATCATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGCAATG > 1:1178517/1‑70 AAAAATGCCAATCATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGCAATG > 1:1393851/1‑70 AAAAATGCCAATCATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGCAATG > 1:21701/1‑70 AAAAATGCCAATCATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGC > 1:675736/1‑66 AAAAATGCCAATCATCGATTCTTCCAGAGGGAACGACTTATGAA > 1:1450937/1‑44 AAATGCCAATCATCGATTCTTCCTGAGGGAACGACTTATGAAA > 1:2168859/1‑43 AATGCCAATCATCGATACTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGCAA > 1:2440695/1‑65 ATGCCAATCATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGCAATGTATAT < 1:2202940/71‑1 TGCCAATCATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGCAATGTATATC < 1:1369286/71‑1 ATCATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGCAATGTATATCAGTT > 1:1400524/1‑70 TCATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGCAATGTATATCAGTTT < 1:2157375/70‑1 TCATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTT > 1:1986457/1‑51 TCATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACA < 1:1558605/46‑1 TCATCGATTCTTCCTGAGGGAACGACTTATGAAACTA < 1:1196498/37‑1 CATCGATTCTTCCTGAGGGAACGACTTATGAAACT < 1:2121984/35‑1 ATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAATACCACATTGTTCGGCAATGTATATCAGTTTAAG > 1:1990107/1‑71 ATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGCAATGTATATCAGTTTAAG > 1:1986571/1‑71 ATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGCAATGTATATCAGTTTAAG > 1:2540591/1‑71 ATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGCAATGTATATCAGTTTAAG < 1:1456645/71‑1 ATCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGCAATGTATATCAG > 1:159873/1‑65 TCGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACAT < 1:1874876/44‑1 TCGATTCTTCCTGAGGGAACGACTTATGAAAATAAAGACCACATTGTTCGGC < 1:1700859/52‑1 CGATTCTTCCTGAGGGAACGACTTATGAAACTAAAGACCACAT > 1:191947/1‑43 |||| TAAAAATGCCAATCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/7047‑7063‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTCCTGAGGGAACGACTTATGAAACTAAAGACCACATTGTTCGGCAATGTATATCAGTTTAAG < W3110S.gb/2564144‑2564081 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |