| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 32 (1.180) | 17 (0.810) +CGCGTACAACT |
14/76 | NT | 35.0% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 50 (1.840) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70122‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAA > W3110S.gb/236044‑236109 ||||||||||| GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACA > 1:2086947/1‑70 GATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAAC > 1:287196/1‑71 GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACA > 1:1660974/1‑70 CTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:228357/71‑1 TATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATG < 1:1858265/70‑1 GCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:989146/71‑1 ACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACA < 1:2391971/43‑1 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCAC > 1:1103520/1‑71 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:1358348/68‑1 GTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC > 1:432884/1‑70 GTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACA > 1:397468/1‑47 TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT > 1:1842973/1‑70 TCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:1105591/1‑40 TCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:493510/1‑40 CATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA < 1:972683/68‑1 CCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAG < 1:415111/71‑1 GTTTTTTTGGACGCGTACAACTCAAGTCTGACATAA > 1:1075011/1‑36 TTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC > 1:1075828/1‑54 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA > 1:467815/1‑55 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA > 1:1198792/1‑55 GTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:2353195/42‑1 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc < 1:289734/71‑2 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc < 1:1931964/71‑2 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTT > 1:32261/1‑60 ACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc > 1:2423935/1‑69 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:330596/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACC > 1:453918/1‑67 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTAC > 1:2334604/1‑45 ACTCAAGTCTGACATAAATGACCCCTATGAGCACa > 1:787995/1‑34 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT > 1:2642643/1‑39 ||||||||||| GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70122‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAA > W3110S.gb/236044‑236109 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |