New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 713954	24 (0.880)	30 (1.100)	21/98	NT	48.4%	coding (546/546 nt)	seqA	regulatory protein for replication initiation
	?	W3110S.gb	2809398 =	40 (1.470)					intergenic (+63/‑28)	ygaH/mprA	predicted inner membrane protein/DNA‑binding transcriptional regulator

TCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/713887‑713954 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAA  >  W3110S.gb/2809398‑2809464                                                                                                                                         TCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGG                                                                  >  1:1967066/1‑71   GAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGG                                                                  >  1:2573946/1‑69    AACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTG                                                               <  1:1649657/71‑1        CATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAAT                                                           >  1:2517115/1‑71                  TCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTC                                                 <  1:1917963/71‑1                  TCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                              <  1:1944782/58‑1                   CGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                        >  1:1131309/1‑63                    GATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTG                                                               <  1:804434/55‑1                    GATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTG                                                               <  1:2256915/55‑1                      TGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATAC                                             >  1:1403566/1‑71                         AATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                          <  1:800850/71‑1                           TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                       <  1:489304/56‑1                              CCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATG                                      <  1:1604503/70‑1                                GGCGGAATTGATTGAGAAGGTTCGCGGAACTATCTAACGGCTGAAATTAA                                                        <  1:1679462/50‑1                                  CGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGCATAG                                 <  1:676595/71‑1                                     AATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA                                                <  1:1323009/53‑1                                     AATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTG                                                               <  1:2600521/38‑1                                      ATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGG                                                   >  1:214387/1‑49                                       TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTT                               >  1:1561320/1‑68                                       TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAG                                 <  1:2499173/66‑1                                       TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAG                                 <  1:2502262/66‑1                                          ATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                          <  1:53898/38‑1                                             GAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA                                                <  1:1903520/45‑1                                             GAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA                                                <  1:1333130/45‑1                                                    TTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT                                                  <  1:678720/36‑1                                                     TTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAA              >  1:1297004/1‑71                                                       GCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAAC             <  1:1610053/70‑1                                                        CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACA            <  1:1498900/70‑1                                                             CTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                           <  1:2138320/50‑1                                                               ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTA     >  1:961352/1‑70                                                               ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAA          >  1:1788298/1‑65                                                               ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTA                         >  1:1186785/1‑50                                                                TCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAG                                 >  1:1058607/1‑41                                                                 CTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                           <  1:275204/46‑1                                                                    ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAA  <  1:2390361/68‑1                                                                    ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTA                         >  1:2356489/1‑45                                                                                                                                         TCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/713887‑713954 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAA  >  W3110S.gb/2809398‑2809464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.