| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 1,301,041 | Δ1,336 bp | 100% | insC–insD | insC, insD | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 1301041–1302370 | 1302376 | 7–1336 | 29 [0] | [0] 30 | insC–insD | insC,insD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1301040 | 0 (0.000) | 22 (0.950) | 15/84 | NT | 100% | intergenic (+218/‑90) | ychE/insC | predicted inner membrane protein/IS2 element protein |
| ? | W3110S.gb | 1302377 = | 0 (0.000) | intergenic (+19/‑519) | insD/oppA | IS2 element protein/oligopeptide transporter subunit | |||||
CTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/1300970‑1301040‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatattaTTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTT > W3110S.gb/1302377‑1302443 CTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATAT < 1:674877/69‑1 ACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATT > 1:173249/1‑71 ACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATT > 1:170141/1‑71 CATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGA < 1:2183691/58‑1 TCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCAC > 1:716498/1‑71 TCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGA < 1:1464962/56‑1 ATGTTATTTTCGCCACATCATAATCCTGGGGTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTG > 1:149668/1‑71 ATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGA > 1:1038393/1‑49 TTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGG > 1:666145/1‑70 CGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTA < 1:2412398/70‑1 ATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT < 1:2522012/45‑1 TCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTC < 1:2047651/49‑1 CATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGT > 1:1577031/1‑71 ATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG > 1:1780474/1‑71 ATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAA > 1:1614431/1‑44 TAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGCAGAGGAA < 1:1818886/66‑1 TAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGG < 1:631329/58‑1 CTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAA > 1:1902480/1‑70 CTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTA < 1:94388/55‑1 GGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAA < 1:1664840/68‑1 GGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAA < 1:1644724/68‑1 TTGCTGAAGATTAATTGAAATGATATTATTTATTCCACTGCCTTTGGTt < 1:2504637/49‑2 TTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAAT > 1:1526878/1‑71 AAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAA < 1:1985474/49‑1 AAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAA > 1:2228263/1‑49 AAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAA < 1:1439272/49‑1 AAGAATAATTGAAATGATATTATTAATTCCACTGCCTTT < 1:1032038/39‑1 AATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTA < 1:1305784/40‑1 AATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGT < 1:937830/71‑1 ATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCA < 1:1681612/70‑1 ATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCA < 1:2425220/51‑1 ATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTAT > 1:2018840/1‑62 TTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTT < 1:2155859/70‑1 CTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/1300970‑1301040‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatattaTTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTT > W3110S.gb/1302377‑1302443 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |