New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | W3110S.gb | = 2200411 | 46 (1.690) | 5 (0.230) +AGCCACTTCC |
3/78 | NT | 13.2% | pseudogene (604/825 nt) pseudogene (604/3796 nt) |
molR molR |
DNA‑binding transcriptional regulator, N‑ter fragment; ECK2108:JW2102:b2115 DNA‑binding transcriptional regulator; ECK2108:JW2102+JW5915+JW5916:b4499 |
? | W3110S.gb | 2615024 = | 37 (1.360) | coding (275/1464 nt) | yfgC | predicted peptidase |
TTACCATCACCAGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2200396‑2200411 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACCGTTTCATTTTT > W3110S.gb/2615024‑2615038 |||||||||| TTACCATCACCAGTAAAGCCACTTCCCACCGTTTCATTTTT < 1:573621/41‑1 TTACCATCACCAGTAAAGCCACTTCCCACCGTTTCATTT > 1:428461/1‑39 ACCATCACCAGTAAAGCCACTTCCCACCGTTTCATTTT > 1:2076097/1‑38 ACCATCACCAGTAAAGCCACTTCCCACCGTTTCATTTT > 1:2507140/1‑38 TCACCAGTAAAGCCACTTCCCACCGTTTCATTTTT < 1:2482258/35‑1 |||||||||| TTACCATCACCAGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2200396‑2200411 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACCGTTTCATTTTT > W3110S.gb/2615024‑2615038 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |