| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 3,261,134 | Δ1,199 bp | 100% | insH–[tdcD] | insH, [tdcD] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 3261134–3262329 | 3262332 | 4–1199 | 25 [0] | [0] 26 | insH–[tdcD] | insH,[tdcD] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3261133 | 0 (0.000) | 15 (0.600) | 12/90 | NT | 100% | intergenic (‑59/‑69) | tdcE/insH | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
| ? | W3110S.gb | 3262333 = | 0 (0.000) | coding (1183/1296 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
TCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3261064‑3261133‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaaC‑TTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACGGCACAAATGA > W3110S.gb/3262333‑3262401 TCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAC > 1:1733179/1‑71TCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAC > 1:400856/1‑71 TACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGT > 1:1884423/1‑65 TCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGGAAATTCTGCGGGCGCGTTA > 1:1401684/1‑62 TCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAC‑TTTGCC > 1:762432/1‑70 TCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAC‑TTTGCCTAAATGAATGGCATCC < 1:1406164/69‑1 CTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAC‑TTTGCCTAAATGAATGGCATCCA > 1:2503338/1‑69 CAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAACTTTTGCCTAAATGAATGGCATCCAAAG > 1:1011893/1‑70 CAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAC‑TTT < 1:2289845/46‑1 AATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAC‑TTTGCCTAAAT < 1:422798/53‑1 TACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAC‑TTTGCCTAAATGAATGGCATCCAAAGCAAT > 1:1727615/1‑70 ACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAC‑TTTGCCTAAATGAATGGCATCCAAAGCAATCA > 1:1720237/1‑71 ACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAC‑TTTGCCTAAATGAATGGCATCCAAAGCAATCA > 1:1817030/1‑71 CTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAC‑TTTGCCTAAATGAA < 1:1258681/52‑1 CTAAATTATGCAAATTCTGCGGGCGCGTTAAC‑TTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTC < 1:256775/71‑1 AAATTATGCAAATTCTGCGGGCGCGTTAAC‑TTTGCCTAAA > 1:1748114/1‑40 AAATTATGCAAATTCTGCGGGCGCGTTAAC‑TTTGCCTAAA > 1:1393875/1‑40 TTATGCAAATTCTGCGGGCGCGTTAAC‑TTTGCCTAAATGAA < 1:1146210/41‑1 TGCAAATTCTGCGGGCGCGTTAAC‑TTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTA < 1:14678/70‑1 AATTCTGCGGGCGCGTTAAC‑TTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCG > 1:2083279/1‑70 CGCGTTAAC‑TTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCT > 1:1323382/1‑49 GTTAAC‑TTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAAT < 1:1544555/60‑1 TTAAC‑TTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCTTTAGTCGGAATAAC < 1:1495410/62‑1 TTAAC‑TTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACGGCACA < 1:427066/68‑1 TAAC‑TTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACGGCACAAAT > 1:780345/1‑70 AAC‑TTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACGGCACAAATGA > 1:1782576/1‑71 AAC‑TTTGCCTAAATGAATGGCATCCAAAGCAATCATATTTTCTTCG > 1:1998005/1‑46 TCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3261064‑3261133‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaaC‑TTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACGGCACAAATGA > W3110S.gb/3262333‑3262401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |