| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 3,742,938 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 3742938–3744266 | 3744273 | 8–1336 | 45 [0] | [0] 45 | insD–insC | insD,insC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3742937 | 0 (0.000) | 38 (1.680) | 25/82 | NT | 100% | intergenic (‑123/+9) | yieE/insD | predicted phosphopantetheinyl transferase/IS2 element protein |
| ? | W3110S.gb | 3744274 = | 0 (0.000) | intergenic (‑100/+21) | insC/yidZ | IS2 element protein/predicted DNA‑binding transcriptional regulator | |||||
ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3742861‑3742937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGAC > W3110S.gb/3744274‑3744342 ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA < 1:236198/71‑1 TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA > 1:405095/1‑70 GGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAA > 1:352886/1‑71 AAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGC > 1:1627283/1‑70 GCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATATTATTGTGAAAT > 1:1751701/1‑60 GCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA < 1:2256981/71‑1 GCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA < 1:1941532/71‑1 TAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAA > 1:1936991/1‑54 AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:125042/1‑71 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC < 1:1685263/70‑1 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:661852/1‑70 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:1002782/1‑70 TTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA < 1:44341/47‑1 CGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA < 1:132315/44‑1 ATTCAGACAAGCTTTTTACAACTTTTTTACATTTTATTGTGAA < 1:135099/43‑1 AGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT < 1:2295027/41‑1 AGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA < 1:699447/38‑1 GACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT < 1:2171675/40‑1 ACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCA > 1:1359064/1‑71 ACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA < 1:739475/37‑1 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATC < 1:906/71‑1 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATC > 1:769677/1‑71 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATC < 1:2086106/71‑1 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA > 1:1912329/1‑64 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA > 1:920711/1‑53 AGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCG < 1:2569020/71‑1 ATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCG > 1:578033/1‑71 TTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCC < 1:1275738/61‑1 TACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCG > 1:1712115/1‑52 ACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTA > 1:564800/1‑70 ACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTA > 1:1858253/1‑70 ACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTA < 1:688767/70‑1 ACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGAC > 1:2475650/1‑65 ACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA > 1:301609/1‑44 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAA < 1:141924/70‑1 AACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA < 1:770551/40‑1 AACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA < 1:1490476/40‑1 ACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGG < 1:2498849/71‑1 ACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA > 1:2187084/1‑39 CTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCAT > 1:228080/1‑57 TTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTT > 1:2129814/1‑71 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:1664910/1‑57 TACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAA > 1:594698/1‑71 TACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTA < 1:79991/70‑1 ACATTTTATTGTGAAATTTGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAAT > 1:1650697/1‑71 ACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAAT > 1:1453598/1‑71 ACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:1866304/1‑53 CATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAAT < 1:306851/70‑1 TTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTT > 1:2296879/1‑71 TTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCA > 1:625644/1‑44 TTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCA > 1:1451978/1‑44 TTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCC < 1:1510516/70‑1 GTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCG > 1:1804695/1‑70 AAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAC > 1:772810/1‑71 ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCA < 1:1747926/71‑1 GGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGAg > 1:847891/1‑70 GGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGAC > 1:815366/1‑71 ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3742861‑3742937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGAC > W3110S.gb/3744274‑3744342 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |