| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 25 (0.920) | 25 (0.960) +TC |
22/94 | NT | 67.6% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
TGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314387‑314521 | tGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTa > 1:667680/1‑71 (MQ=255) aTAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCaa < 1:2384512/71‑1 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa < 1:486535‑M1/13‑1 (MQ=255) ggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGt < 1:1467415‑M1/17‑1 (MQ=255) taccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGac > 1:2101118‑M1/50‑70 (MQ=255) aGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGaca > 1:262676/1‑71 (MQ=255) gAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGaca > 1:191175/1‑70 (MQ=255) gtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACAcgcg < 1:2302478‑M1/26‑1 (MQ=255) tcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGac < 1:903847‑M1/21‑1 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGc > 1:112272‑M1/43‑53 (MQ=255) ccGCATGCTATTTCTGCCGAGGTGACCTATAGGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTa < 1:1459942/71‑1 (MQ=255) cgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGTACACGCGGc > 1:1317545‑M1/41‑68 (MQ=255) cgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCt < 1:461818‑M1/29‑1 (MQ=255) cgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCt < 1:2566471‑M1/29‑1 (MQ=255) cgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCt > 1:1570673‑M1/41‑69 (MQ=255) cATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACAcg < 1:1278513/62‑1 (MQ=255) tGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACAcgcg > 1:337450/1‑62 (MQ=255) tGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:2197715/1‑69 (MQ=255) acttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg < 1:1928488‑M1/36‑1 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATa > 1:2113682/1‑49 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:955258/1‑70 (MQ=255) tATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCa > 1:2436789/1‑42 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa > 1:1497838/1‑71 (MQ=255) ttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa > 1:484017/1‑65 (MQ=255) cTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGt > 1:2336080/1‑45 (MQ=255) acttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc < 1:2637380‑M1/43‑1 (MQ=255) ttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGt < 1:2323723‑M1/17‑1 (MQ=255) tttcagcgaggcccgggatcactgaTCTTACCCAGCAATa < 1:1570577‑M1/15‑1 (MQ=255) tttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTg > 1:729613‑M1/26‑43 (MQ=255) ttcagcgaggcccgggatcactgaTCTTACCCAGCaa < 1:1933345‑M1/13‑1 (MQ=255) ttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCgg < 1:2346482‑M1/27‑1 (MQ=255) tcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:163579‑M1/48‑1 (MQ=255) gAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:1183773/1‑71 (MQ=255) gAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:781698/1‑71 (MQ=255) agcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtc > 1:828730‑M1/22‑70 (MQ=255) gTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:1020868/71‑1 (MQ=255) tGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:603723/71‑1 (MQ=255) gaggcccgggatcactgaTCTTACCCAGCAATAGTGGACAcgc > 1:941293‑M1/19‑43 (MQ=255) gACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag > 1:1036275/1‑71 (MQ=255) gACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:1708419/1‑70 (MQ=255) aCCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg > 1:1933750/1‑71 (MQ=255) ggcccggtatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:1044913‑M1/17‑71 (MQ=255) gcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:1382997‑M1/55‑1 (MQ=255) cccgggatcactgaTCTTACCCAGCAATAGTGGaca < 1:1963244‑M1/22‑1 (MQ=255) ataCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc > 1:1324601/1‑71 (MQ=255) ataCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc > 1:1153813/1‑71 (MQ=255) taCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:1732930/50‑1 (MQ=255) taCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc < 1:1975574/70‑1 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:1659752‑M1/11‑62 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:1480707/71‑1 (MQ=255) atcacttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:713570‑M1/61‑1 (MQ=255) acttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt > 1:2148002‑M1/7‑70 (MQ=255) gTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcag < 1:82561/52‑1 (MQ=40) cttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:2481893‑M1/64‑1 (MQ=255) ttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:650773‑M1/5‑42 (MQ=255) tGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtc > 1:1028604/1‑53 (MQ=38) tGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTg < 1:2339454/60‑1 (MQ=38) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg < 1:554115‑M1/32‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg < 1:602809‑M1/32‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg < 1:1868258‑M1/32‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:2599672‑M1/53‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:924410‑M1/53‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:2043856‑M1/53‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:2310584‑M1/66‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:827783‑M1/67‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:699435‑M1/67‑1 (MQ=255) tgaTCTTACACAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:2362568‑M1/40‑1 (MQ=255) gCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag > 1:1784217/1‑56 (MQ=35) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa < 1:1641296‑M1/68‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc < 1:2159411‑M1/41‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:1233335‑M1/2‑52 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:2205508‑M1/2‑52 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa > 1:435067‑M1/2‑58 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCAGATGACaa > 1:2571351‑M1/2‑70 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:18772‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:2379817‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:239297‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:1283903‑M1/69‑1 (MQ=255) | TGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314387‑314521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |