| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 713380 = | 24 (0.880) | 14 (0.560) | 11/90 | NT | 38.9% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 22 (0.880) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
AGTTTTTCTGCAAGCCAGGCTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTACAGCTATAT > W3110S.gb/713311‑713449 | cacacgtaaaaaggtggacgaactgctggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataat > 1:1627309‑M1/70‑71 (MQ=255) tttCTGCAAGCCAGGCTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCa < 1:848004/70‑1 (MQ=255) aaaggtggacgaactgctggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataATTCAGCTaa > 1:855309‑M1/61‑70 (MQ=255) gacgaactgctggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataATTCAGCTAAGAcactg > 1:1600799‑M1/54‑70 (MQ=255) aGGCTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGAcactg > 1:2399878/1‑70 (MQ=255) gCTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGAcactgcac > 1:1677345/1‑71 (MQ=255) aactgctggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataAtt < 1:102370‑M1/3‑1 (MQ=255) aactgctggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataATTCAGCTAAGAcactgca < 1:1723017‑M1/19‑1 (MQ=255) aCGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGAt < 1:1198160/71‑1 (MQ=255) gctggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataa < 1:1952349‑M1/1‑1 (MQ=255) gctggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataATTCAGCTAAGACACTGCACTGGAt < 1:858941‑M1/25‑1 (MQ=255) tttgtacaaaccaggagtcgtttcacccgcgaaaaaataa < 1:421060‑M1/1‑1 (MQ=255) ttgtacaaaccaggagtcgtttcacccgcgaaaaaataATTCAGCTAAGa < 1:2100247‑M1/12‑1 (MQ=255) ttgtacaaaccaggagtcgtttcacccgcgaaaaaataATTCAGCTAAGa < 1:1663345‑M1/12‑1 (MQ=255) cGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTaa > 1:1149142/1‑48 (MQ=255) cGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGac > 1:295532/1‑51 (MQ=255) cGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATg > 1:1938932/1‑70 (MQ=255) cGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATg > 1:1658309/1‑70 (MQ=255) tacaaaccaggagtcgtttcacccgcgaaaaaataATTCAGc > 1:864115‑M1/36‑42 (MQ=255) ggATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGAtt > 1:1809619/1‑71 (MQ=255) gATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTg < 1:1535859/71‑1 (MQ=255) ccaggagtcgtttcacccgcgaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTg > 1:1704601‑M1/30‑71 (MQ=255) tttATTCATATACTCCTGGCGACTTGTATTCAGCTaa < 1:2516174/37‑1 (MQ=255) ttATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGaa < 1:1261980/70‑1 (MQ=255) ttATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAg > 1:1232284/1‑71 (MQ=255) tATTCATATACTCCTGGCGACTTGTATTCAGCTaa < 1:280639/35‑1 (MQ=255) agtcgtttcacccgcgaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTg > 1:1591319‑M1/25‑66 (MQ=255) gtttcacccgcgaaaaaataATTCAGCTAAGAcact < 1:1214062‑M1/16‑1 (MQ=255) gtttcacccgcgaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTtgat > 1:748655‑M1/21‑70 (MQ=255) atatACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTa < 1:260816/47‑1 (MQ=255) tataCTCCTGGCGACTTGTATTCAGCTAAGAcactg < 1:2131506/36‑1 (MQ=255) ataCTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGa > 1:466364/1‑48 (MQ=255) taCTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTtgatgat > 1:395371/1‑70 (MQ=255) gcTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTtgatgatg > 1:1887088/2‑70 (MQ=255) ccgcgaaaaaataATTCAGCTAAGACACTGCATTGGATTAAGATGAAAACGATTGAAGTtga > 1:1045844‑M1/14‑62 (MQ=255) ccgcgaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTtga > 1:2621036‑M1/14‑62 (MQ=255) cTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACg < 1:2515157/50‑1 (MQ=255) cTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGAt < 1:1332709/52‑1 (MQ=255) cTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTg < 1:534542/54‑1 (MQ=255) gcgaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAActc < 1:2241465‑M1/59‑1 (MQ=255) ggCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGaaaa > 1:1402723/1‑46 (MQ=255) gaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGtt > 1:591384‑M1/10‑56 (MQ=255) gCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGaa > 1:1225566/1‑65 (MQ=255) gCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTAc < 1:1014382/71‑1 (MQ=255) aataATTCAGCTAAGACTCTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTACAGCta > 1:1711123‑M1/5‑71 (MQ=255) aataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTACAGCta > 1:606551‑M1/5‑71 (MQ=255) tGTATTCTGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTACAGCta > 1:1917353/1‑70 (MQ=255) gTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTACAGCta < 1:1618938/69‑1 (MQ=255) gTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTACAGCta < 1:2170245/69‑1 (MQ=255) tATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTACAGCTatat < 1:1511439/71‑1 (MQ=255) | AGTTTTTCTGCAAGCCAGGCTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTACAGCTATAT > W3110S.gb/713311‑713449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |