| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 45 (1.650) | 22 (1.140) +AGGGTCCCTAAGTC |
16/70 | NT | 54.0% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 8 (0.290) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCC > W3110S.gb/3464814‑3464940 | cgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa > 1:1700892‑M2/66‑67 (MQ=255) gccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa > 1:426737‑M2/63‑70 (MQ=255) gttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGc > 1:1946877‑M2/59‑71 (MQ=255) ttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa < 1:628994‑M2/9‑1 (MQ=255) ttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:2116252‑M2/8‑1 (MQ=255) gtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc > 1:125090‑M2/56‑69 (MQ=255) gaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt < 1:2189202‑M2/21‑1 (MQ=255) aaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa > 1:1415389‑M2/50‑57 (MQ=255) aaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa > 1:248641‑M2/50‑57 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:421898‑M2/23‑1 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:1320805‑M2/7‑1 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc < 1:480486‑M2/14‑1 (MQ=255) gtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACt > 1:1794823‑M2/45‑71 (MQ=255) ggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACt > 1:1750580/1‑70 (MQ=35) aTTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg > 1:294641/1‑71 (MQ=34) tttGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGc > 1:53031/1‑71 (MQ=34) tgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc < 1:2313356‑M2/14‑1 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGa > 1:691558‑M2/38‑62 (MQ=255) tgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaaa > 1:456166‑M2/37‑46 (MQ=255) gccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt > 1:1989727‑M2/33‑52 (MQ=255) ccgtcaagttgtcataaaggggccctaagtcTAAAACGaa < 1:2334298‑M2/9‑1 (MQ=255) cAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc > 1:1099326/1‑52 (MQ=33) tcaagttgtcataaagggtccctaagtcTAAAACg < 1:295669‑M2/7‑1 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACg < 1:1872271‑M2/7‑1 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaaa > 1:2249339‑M2/27‑36 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaa > 1:2264309‑M2/27‑35 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTgac > 1:1488476‑M2/23‑69 (MQ=255) ttCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCt > 1:1464/1‑71 (MQ=34) ataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGttt < 1:2128986‑M2/40‑1 (MQ=255) caaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTc > 1:1766467/1‑71 (MQ=34) caaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTc < 1:835626/71‑1 (MQ=34) aacaacAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTccc < 1:1455161/71‑1 (MQ=34) aGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAt < 1:496440/51‑1 (MQ=35) | AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCC > W3110S.gb/3464814‑3464940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |