| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 33 (1.180) | 30 (1.370) +CGCGTACAACT |
15/78 | NT | 47.5% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 52 (1.860) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
TTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70127‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAA > W3110S.gb/236044‑236108 ||||||||||| TTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCG < 1:2401320/71‑1 ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:911816/1‑70 CTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:528176/71‑1 TTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT < 1:388839/70‑1 TATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA > 1:2153699/1‑71 TATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA > 1:1799242/1‑71 TCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGAC < 1:1123675/70‑1 TCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:571992/64‑1 TCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:2364585/64‑1 TCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:1927226/64‑1 TCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:999274/64‑1 GCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:765867/71‑1 GCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAA > 1:1695522/1‑64 TCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGAC > 1:1224378/1‑63 TCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGAC > 1:830105/1‑63 TCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA < 1:990849/47‑1 TCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA < 1:891432/47‑1 TCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA < 1:1197677/47‑1 TCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA < 1:2407659/47‑1 TCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGT > 1:1348488/1‑47 TCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGT > 1:759781/1‑47 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTG < 1:730063/48‑1 CTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:1372643/66‑1 CTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:1513265/66‑1 TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:2168895/69‑1 TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGT > 1:1995138/1‑38 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA > 1:840079/1‑43 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA > 1:2132554/1‑43 CCCGTTTTTTTGGACGCGTACAACTCAAGGCTGACATAAAT < 1:933564/41‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAT < 1:8655/70‑1 TTTTTGGACGCGTATAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:1142523/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:849905/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:87936/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:1876266/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:1376805/1‑71 TTTGGACTCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTT < 1:1757231/70‑1 TTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTT < 1:2668338/70‑1 TTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTT < 1:1766167/70‑1 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc < 1:491490/71‑2 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:307165/41‑1 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGca < 1:486074/70‑3 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA > 1:753798/1‑41 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA > 1:379209/1‑41 AACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA < 1:1624826/43‑1 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCG < 1:379098/53‑1 ||||||||||| TTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70127‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAA > W3110S.gb/236044‑236108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |