| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2018583 | 3 (0.110) | 34 (1.270) | 14/96 | NT | 92.2% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
CAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2018515‑2018583‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCC < W3110S.gb/2521059‑2520991 CAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCA > 1:2297807/1‑70 GATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACT > 1:1505530/1‑70 ATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTT < 1:2173981/70‑1 ATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTT < 1:1324322/70‑1 ATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTT < 1:134711/70‑1 ATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTT < 1:2187773/70‑1 ATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTT < 1:544388/70‑1 TGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAG < 1:1518996/70‑1 TGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAG < 1:2042214/70‑1 TGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAG < 1:2000713/70‑1 TGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAG < 1:1248725/70‑1 CTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCA < 1:174128/71‑1 CTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCA < 1:1787304/71‑1 CTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCA < 1:810019/71‑1 CTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCA < 1:915479/71‑1 CCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTA < 1:401129/51‑1 CCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTA < 1:1772879/51‑1 TTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAAC > 1:985669/1‑51 TAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTG > 1:2324478/1‑69 AGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG < 1:1541655/70‑1 TTTGCATGGCTGGCGGTTGCTGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG < 1:2517172/68‑1 TTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG < 1:479644/68‑1 TGCATGTCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAA > 1:1144647/1‑68 TGCATGGCTGGCGCTTGCGGGGCGATCCCACGATAAGCGCTAAC > 1:402980/1‑44 TGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGC > 1:1529212/1‑71 TGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAA > 1:1151224/1‑68 GCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGC < 1:1480839/70‑1 GCATGGCTGGCGCTTGCGGGGCGACCCCACCATAAGCGCTAACTTAATGGTTGAACCATCTGAAGAATGC < 1:1788656/70‑1 GGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAA > 1:2469925/1‑63 CTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCT > 1:2249870/1‑71 CTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG < 1:1581754/53‑1 CTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG < 1:1707789/53‑1 CTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG < 1:819297/53‑1 GCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAA < 1:1114129/71‑1 GATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGA > 1:1475194/1‑71 ACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGC > 1:1499090/1‑71 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCC > 1:181143/1‑71 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGC < 1:1501671/70‑1 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGA > 1:546221/1‑43 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGA > 1:883214/1‑43 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGC < 1:2594011/41‑1 CAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2018515‑2018583‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCC < W3110S.gb/2521059‑2520991 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |