| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2018571 = | 0 (0.000) | 21 (0.800) | 11/94 | NT | 100% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
CCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGC > W3110S.gb/2018502‑2018633 | gtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg < 1:1930166‑M1/2‑1 (MQ=255)gtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg < 1:275495‑M1/2‑1 (MQ=255)gtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatg < 1:2162094‑M1/1‑1 (MQ=255)gtgagagtaaatcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatg < 1:304811‑M1/1‑1 (MQ=255) ccGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCgggg > 1:2437636/1‑71 (MQ=255) cGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGc > 1:118565/1‑71 (MQ=255) taattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATcc > 1:2504310‑M1/63‑71 (MQ=255) attcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCa < 1:542223‑M1/11‑1 (MQ=255) catcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg < 1:152971‑M1/3‑1 (MQ=255) catcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCAccc < 1:1595769‑M1/14‑1 (MQ=255) cAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCa > 1:2297807‑M1/1‑69 (MQ=255) tcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg > 1:1429683‑M1/56‑57 (MQ=255) tcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg > 1:1479714‑M1/56‑57 (MQ=255) tcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg > 1:282798‑M1/56‑57 (MQ=255) tcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg > 1:1402976‑M1/56‑57 (MQ=255) tcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg > 1:2263267‑M1/56‑57 (MQ=255) acgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCg > 1:815854‑M1/51‑55 (MQ=255) acgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCg > 1:159298‑M1/51‑55 (MQ=255) gttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATcc > 1:2086317‑M1/49‑57 (MQ=255) gttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATcc > 1:2066981‑M1/49‑57 (MQ=255) gttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATcc > 1:1731040‑M1/49‑57 (MQ=255) gttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATcc > 1:2316366‑M1/49‑57 (MQ=255) aaatcatatcaggcctaataccacaacccttaagttagcgcttatg < 1:147130‑M1/1‑1 (MQ=255) gatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaact > 1:1505530‑M1/1‑57 (MQ=255) atcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggcggc > 1:1265508‑M1/44‑71 (MQ=255) atatGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaactt < 1:544388‑M1/70‑15 (MQ=255) atatGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaactt < 1:134711‑M1/70‑15 (MQ=255) atatGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaactt < 1:2187773‑M1/70‑15 (MQ=255) atatGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaactt < 1:2173981‑M1/70‑15 (MQ=255) atatGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaactt < 1:1324322‑M1/70‑15 (MQ=255) tGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaag < 1:1518996‑M1/70‑18 (MQ=255) tGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaag < 1:1248725‑M1/70‑18 (MQ=255) tGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaag < 1:2000713‑M1/70‑18 (MQ=255) tGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaag < 1:2042214‑M1/70‑18 (MQ=255) atcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa < 1:435234‑M1/32‑1 (MQ=255) atcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa < 1:1667196‑M1/32‑1 (MQ=255) atcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa < 1:461369‑M1/32‑1 (MQ=255) aggcgtaataccacaacccttatgttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAg > 1:358556‑M1/36‑70 (MQ=255) cTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaacca < 1:1787304‑M1/71‑28 (MQ=255) cTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaacca < 1:174128‑M1/71‑28 (MQ=255) cTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaacca < 1:810019‑M1/71‑28 (MQ=255) cTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaacca < 1:915479‑M1/71‑28 (MQ=255) ccTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgcta < 1:401129‑M1/51‑11 (MQ=255) ccTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgcta < 1:1772879‑M1/51‑11 (MQ=255) ttAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaac > 1:985669‑M1/1‑39 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:2324478‑M1/1‑38 (MQ=255) ccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGAt < 1:2325882‑M1/46‑1 (MQ=255) cacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATg > 1:47178‑M1/25‑71 (MQ=255) cacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATg > 1:2206237‑M1/25‑71 (MQ=255) cacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATg > 1:2168169‑M1/25‑71 (MQ=255) aGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:1541655‑M1/70‑35 (MQ=255) tttGCATGGCTGGCGGTTGCTGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:2517172‑M1/68‑35 (MQ=255) tttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:479644‑M1/68‑35 (MQ=255) tGCATGTCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaa > 1:1144647‑M1/1‑32 (MQ=255) tGCATGGCTGGCGCTTGCGGGGCGATCCCACGataagcgctaac > 1:402980‑M1/1‑32 (MQ=255) tGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc > 1:1529212‑M1/1‑32 (MQ=255) tGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaa > 1:1151224‑M1/1‑32 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:1480839‑M1/70‑40 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGACCCCACCataagcgctaacttaatggttgaaccatctgaagaatgc < 1:1788656‑M1/70‑40 (MQ=255) taagttagcgcttatGGGCGATCCCACCCTCCATc < 1:1974349‑M1/20‑1 (MQ=255) ggctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaa > 1:2469925‑M1/1‑27 (MQ=255) ctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcct > 1:2249870‑M1/1‑25 (MQ=255) agcgcttatGGGCGATGCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGaa < 1:1922099‑M1/49‑1 (MQ=255) agcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGaa < 1:2675727‑M1/49‑1 (MQ=255) agcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGaa < 1:1531062‑M1/49‑1 (MQ=255) gcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGc > 1:2578594‑M1/9‑71 (MQ=255) cTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:1707789‑M1/53‑35 (MQ=255) cTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:1581754‑M1/53‑35 (MQ=255) cTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:819297‑M1/53‑35 (MQ=255) | CCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGC > W3110S.gb/2018502‑2018633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |