| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4547364 = | 23 (0.820) | 12 (0.520) | 5/82 | NT | 45.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 10 (0.440) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
ATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAT > W3110S.gb/4547294‑4547424 | aTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAT < 1:415123‑M1/71‑1 (MQ=255) ttAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT < 1:2004513‑M1/71‑1 (MQ=255) tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgg < 1:1880447‑M1/4‑1 (MQ=255) aaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG < 1:1005025‑M1/68‑1 (MQ=255) gagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA < 1:2053800‑M1/71‑1 (MQ=255) tgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa > 1:614833‑M1/61‑69 (MQ=255) ttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt < 1:2060033‑M1/15‑1 (MQ=255) ttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt < 1:1132438‑M1/15‑1 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa > 1:2564523/1‑70 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa > 1:2506787/1‑70 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa > 1:760301/1‑70 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa > 1:1016269/1‑70 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGG > 1:362012‑M1/1‑58 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGG > 1:2461307‑M1/1‑58 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGG > 1:2399464‑M1/1‑58 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGG > 1:1384934‑M1/1‑58 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGG > 1:2053814‑M1/1‑58 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata > 1:643199/1‑71 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgatacatTTGGGGCCAAACTGTCCATATCataaa > 1:2243355‑M1/44‑70 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTAGGGGCCAAACTGTCCATATCataaa < 1:984616‑M1/27‑1 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTAGGGGCCAAACTGTCCATATCataaa < 1:1684805‑M1/27‑1 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc > 1:207586/1‑57 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:2209415/69‑1 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcg < 1:1148125‑M1/71‑28 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcg < 1:470270‑M1/71‑28 (MQ=255) aataaAGTTAAAAAAACAAATAAATTCAAGACAAT > 1:191542‑M1/1‑35 (MQ=255) aataaAGTTAAAAAAACAAATAAATACAAGACAAT > 1:2114918‑M1/1‑35 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt < 1:177895/71‑1 (MQ=255) tgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt < 1:2082706‑M1/41‑1 (MQ=255) tgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt < 1:1742333‑M1/41‑1 (MQ=255) tgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt < 1:1785909‑M1/41‑1 (MQ=255) gTTAAAAAAACAAATAAATAGAAGACAATTGGGGCCAAACTGTCCa > 1:1624575/1‑46 (MQ=255) gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa > 1:2510862/1‑46 (MQ=255) tAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaag > 1:1555604‑M1/1‑35 (MQ=255) tAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaag > 1:479048‑M1/1‑35 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAAc > 1:2356138/1‑37 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAAc > 1:175445/1‑37 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAAc > 1:2638370/1‑37 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttt < 1:2657502‑M1/70‑38 (MQ=255) aaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTa > 1:681509/1‑54 (MQ=255) taaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttat > 1:838835‑M1/1‑23 (MQ=255) taaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttat > 1:2046932‑M1/1‑23 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg < 1:438481‑M1/50‑1 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg < 1:1540441‑M1/50‑1 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg < 1:378077‑M1/50‑1 (MQ=255) aaaagatgaaacatTTGGAGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg < 1:2096958‑M1/50‑1 (MQ=255) aaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCa > 1:853498/1‑65 (MQ=255) aaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa > 1:310545/1‑71 (MQ=255) aataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa > 1:2382819/1‑70 (MQ=255) aataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa > 1:756078/1‑70 (MQ=255) taCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:224004/1‑71 (MQ=255) cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg > 1:444301/1‑39 (MQ=255) cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg > 1:427210/1‑39 (MQ=255) cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg > 1:2272191/1‑39 (MQ=255) cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg > 1:2506896/1‑39 (MQ=255) | ATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAT > W3110S.gb/4547294‑4547424 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |