| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 53 (1.890) | 21/100 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
Only 100 of 117 total aligned reads displayed.
ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > W3110S.gb/575930‑576068 | atgatgaaccctgttctatggctccagattacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:945335‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2346502‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1660531‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1656417‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:667756‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:2588888‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1527767‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1970634‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:2565328‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:806824‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:403019‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:215946‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:519388‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctaatatcagggacttgttcgcaccttcct > 1:503645‑M2/71‑71 (MQ=255) tgatgaaccctgttctatggctccaggtgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1570822‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1446690‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1551336‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:115231‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:773583‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1600985‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:23452‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:555165‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:2032863‑M2/1‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgtgcgcaccttcct < 1:295644‑M2/1‑1 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2490227‑M2/69‑69 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:449710‑M2/69‑69 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1702347‑M2/68‑68 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1311063‑M2/68‑68 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:895156‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:217145‑M2/4‑1 (MQ=255) atgaaccctcttctatggctacagatgacaaacatgatctcatatcagggacttgtacgcaccttccTTa > 1:1879518‑M2/68‑70 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:2415057‑M2/67‑70 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:205589‑M2/4‑1 (MQ=255) aaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTAc > 1:1618844‑M2/65‑71 (MQ=255) aaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTAc > 1:2269845‑M2/65‑71 (MQ=255) ccctgttctatggctccatatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:1958033‑M2/4‑1 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1728946‑M2/2‑1 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGa > 1:618550‑M2/62‑71 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGa < 1:656835‑M2/10‑1 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGa < 1:1574272‑M2/10‑1 (MQ=255) ccagatgacaaacattatctcatatcagggacttgttcgcaccttcctt < 1:34414‑M2/2‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:198294‑M2/25‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:2068838‑M2/25‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:1864129‑M2/25‑1 (MQ=255) agatgacaaacatgatctcatatcatggacttgttcgcaccttcctt < 1:326369‑M2/2‑1 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:363550‑M2/2‑1 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATg < 1:1736174‑M2/12‑1 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATg < 1:550978‑M2/12‑1 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1460060‑M2/2‑1 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:915598‑M2/2‑1 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:447841‑M2/1‑1 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:50858‑M2/1‑1 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:625351‑M2/1‑1 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:2012733‑M2/1‑1 (MQ=255) tgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAtt > 1:420581‑M2/43‑71 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:952885‑M2/42‑44 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:1561486‑M2/42‑44 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGa > 1:1057839‑M2/41‑50 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGa > 1:1284100‑M2/41‑50 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGa > 1:2596171‑M2/41‑50 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGa > 1:735648‑M2/41‑50 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:185507‑M2/31‑1 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1232744‑M2/2‑1 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1910257‑M2/2‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:1704302‑M2/39‑44 (MQ=255) acaaacatgatctcatatcagggagttcgcaccttccTTAGTACTGa > 1:1447698‑M2/38‑47 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCAc < 1:1482273‑M2/34‑1 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCAc < 1:1319505‑M2/34‑1 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCAc < 1:1996352‑M2/34‑1 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc > 1:1779658‑M2/37‑67 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc > 1:2025370‑M2/37‑67 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc > 1:1084078‑M2/37‑67 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTg > 1:1294563‑M2/36‑71 (MQ=255) atgatctcatatcagggacttgttcgcaccttcctt < 1:755808‑M2/2‑1 (MQ=255) atgatctcatatcagggacttgttcgcaccttcctt < 1:1351089‑M2/2‑1 (MQ=255) atgatctcatatcagggacttgttcgcaccttcctt < 1:2195815‑M2/2‑1 (MQ=255) atgatctcatatcagggacttgttcgcaccttcctt < 1:1151242‑M2/2‑1 (MQ=255) atgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGt < 1:2357872‑M2/37‑1 (MQ=255) atgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGt < 1:792105‑M2/37‑1 (MQ=255) atgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGt < 1:1283836‑M2/37‑1 (MQ=255) tgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGt > 1:572725‑M2/34‑70 (MQ=255) atctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTa < 1:1458063‑M2/39‑1 (MQ=255) ctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:627714‑M2/31‑1 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCa > 1:2564401‑M2/24‑71 (MQ=255) ttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAtt < 1:2298706‑M2/29‑1 (MQ=255) ttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAtt < 1:282158‑M2/29‑1 (MQ=255) ttgttcgcaccttccTTAGTACTGAAGCAGCTACAGCAGAAAtt < 1:1063817‑M2/29‑1 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:472944‑M2/15‑41 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:760606‑M2/15‑41 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:2610594‑M2/15‑41 (MQ=255) ttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCt > 1:2537706‑M2/13‑71 (MQ=255) ttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCt > 1:2416894‑M2/13‑71 (MQ=255) ttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCt > 1:2413705‑M2/13‑71 (MQ=255) ccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCa < 1:2665945‑M2/48‑1 (MQ=255) ttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCa > 1:301936‑M2/5‑37 (MQ=255) ttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCa > 1:2194542‑M2/5‑37 (MQ=255) ttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttttt < 1:2248971‑M2/46‑1 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc > 1:879491‑M2/4‑53 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGaa > 1:662381‑M2/4‑71 (MQ=255) ccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAc > 1:2646854‑M2/3‑71 (MQ=255) | ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > W3110S.gb/575930‑576068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |