| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 45 (1.640) | 19/98 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 118 total aligned reads displayed.
AAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACCA > W3110S.gb/3920211‑3920351 | aaGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC < 1:1461114‑M2/71‑1 (MQ=255)aaGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC < 1:428913‑M2/71‑1 (MQ=255)aaGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC < 1:815765‑M2/71‑1 (MQ=255) aGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:2326811‑M2/1‑70 (MQ=255) aGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:1855976‑M2/1‑70 (MQ=255) aGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:2321938‑M2/1‑70 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt > 1:2095345‑M2/66‑71 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt > 1:2667786‑M2/66‑71 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt > 1:456000‑M2/66‑71 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt > 1:1167212‑M2/66‑71 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt > 1:1770377‑M2/62‑68 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACttcgg > 1:1530160‑M2/62‑68 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:1358234‑M2/9‑1 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:1733206‑M2/71‑11 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctta > 1:2086178‑M2/1‑61 (MQ=255) acaatttgaaaacaagaacctcgcttagtcctgtgtccatattacgtgggtaggatcacac > 1:494484‑M2/58‑61 (MQ=255) acaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac > 1:1657114‑M2/58‑61 (MQ=255) atttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:974318‑M2/9‑1 (MQ=255) atttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:618320‑M2/9‑1 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt > 1:351986‑M2/53‑62 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:1291903‑M2/53‑63 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:948769‑M2/53‑63 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:1075682‑M2/53‑63 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacaca > 1:579702‑M2/52‑56 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:1027400‑M2/52‑71 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTc < 1:1343292‑M2/22‑1 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:898200‑M2/71‑20 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:2412904‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:1769282‑M2/68‑17 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:952460‑M2/68‑17 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:2061717‑M2/68‑17 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:123315‑M2/68‑17 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:1922426‑M2/57‑6 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:1818895‑M2/1‑50 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:158520‑M2/1‑50 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga > 1:330343‑M2/1‑48 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga > 1:2336324‑M2/1‑48 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt > 1:1354895‑M2/43‑70 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcacact > 1:2044406‑M2/42‑45 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcgg < 1:1474020‑M2/71‑31 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga > 1:1150012‑M2/1‑41 (MQ=255) gcttaagcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:1548605‑M2/36‑46 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:416548‑M2/1‑38 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:2600916‑M2/1‑38 (MQ=255) gcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGTTgaagccgaag < 1:949220‑M2/41‑1 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:230984‑M2/24‑1 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:38556‑M2/24‑1 (MQ=255) tgtgtccatattacgtgggtaggatcACACATCttt < 1:2584987‑M2/10‑1 (MQ=255) tgtgtccatattacgtgggtaggatcACACATCTTTag < 1:1499012‑M2/12‑1 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacg < 1:2035825‑M2/57‑28 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacg < 1:2180411‑M2/57‑28 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacg < 1:909818‑M2/57‑28 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacg < 1:1316428‑M2/57‑28 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTagag > 1:2640383‑M2/25‑38 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTagag > 1:1468087‑M2/25‑38 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:1062487‑M2/24‑1 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:2511198‑M2/24‑1 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:1944043‑M2/24‑1 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:1427395‑M2/24‑1 (MQ=255) cTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaac < 1:2051946‑M2/71‑45 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:340624‑M2/21‑1 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:1181292‑M2/21‑1 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:2468692‑M2/21‑1 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:857524‑M2/21‑1 (MQ=255) tGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggact < 1:1036709‑M2/51‑26 (MQ=255) tGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggaca < 1:1962136‑M2/51‑26 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaac > 1:1791115‑M2/1‑24 (MQ=255) tattacgtgggtaggatcACACATC‑TTAGAGCCATCGTCAGGAGTGATgaagccgaagcc < 1:1911113‑M2/42‑1 (MQ=255) tAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:1922197‑M2/41‑20 (MQ=255) tAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:2633078‑M2/41‑20 (MQ=255) tAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:1875328‑M2/41‑20 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:405474‑M2/1‑21 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:934038‑M2/1‑21 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:644981‑M2/1‑21 (MQ=255) ttacgtgggtaggatgACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:1649740‑M2/17‑71 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCTTCGTCAgg < 1:1110862‑M2/25‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatga > 1:1986294‑M2/17‑49 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatga > 1:2323633‑M2/17‑49 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt < 1:157256‑M2/70‑52 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaata < 1:2103565‑M2/37‑19 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaata < 1:645652‑M2/37‑19 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg > 1:2567881‑M2/15‑70 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:1656149‑M2/1‑17 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:1675935‑M2/1‑17 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgaggctaagtgagtaaactctcagtcag > 1:1845424‑M2/1‑17 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtg > 1:141839‑M2/1‑17 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:1954429‑M2/1‑16 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt > 1:1300985‑M2/8‑71 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:2507923‑M2/67‑1 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:814724‑M2/67‑1 (MQ=255) tcactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:763177‑M2/2‑4 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:1164905‑M2/1‑4 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATa > 1:2510381‑M2/1‑71 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATa > 1:800707‑M2/1‑71 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATa > 1:2138702‑M2/1‑71 (MQ=255) cacaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAc < 1:444964/71‑1 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgac > 1:1882476‑M2/1‑1 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgac > 1:1174592‑M2/1‑1 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:2132285‑M2/1‑1 (MQ=255) caTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAc > 1:293032/1‑69 (MQ=255) | AAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACCA > W3110S.gb/3920211‑3920351 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |