Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 71,214 T→C 45.4% F276F (TTT→TTC araC → DNA‑binding transcriptional dual regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb71,2140TC45.4% 8.8 / 58.1 44F276F (TTT→TTCaraCDNA‑binding transcriptional dual regulator
Reads supporting (aligned to +/- strand):  ref base T (13/11);  new base C (9/11);  total (22/22)
Fisher's exact test for biased strand distribution p-value = 7.63e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TTGGTTTTGACGATCAACTCTATTTCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAC  >  W3110S.gb/71144‑71282
                                                                      |                                                                    
ttGGTTTTGACGATCAACTCTATTTCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGttt                                                                      >  1:2467546/1‑71 (MQ=255)
ttGGTTTTGACGATAAACTCTATTTCTCGAGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGttt                                                                      >  1:1660433/1‑71 (MQ=255)
  ggTTTTGACGATCAACTCTATTTCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCg                                                                    >  1:1277143/1‑71 (MQ=255)
              cAACTCTATTTCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTtgtg                                                         >  1:214346/1‑70 (MQ=255)
                      tttCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGaaaaa                                                 <  1:491442/70‑1 (MQ=255)
                      tttCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGaaaa                                                  <  1:2254790/69‑1 (MQ=255)
                      tttCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGaaaa                                                  <  1:1298185/69‑1 (MQ=255)
                      tttCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGaaaa                                                  <  1:1703738/69‑1 (MQ=255)
                      tttCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGaaa                                                   <  1:103623/68‑1 (MQ=255)
                        tctcGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGc                                                                 >  1:575059/1‑52 (MQ=255)
                        tctcGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGt                                               <  1:51593/70‑1 (MQ=255)
                         ctcGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTg                                              >  1:2154272/1‑70 (MQ=255)
                         ctcGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTg                                              >  1:478242/1‑70 (MQ=255)
                         ctcGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTg                                              >  1:2011509/1‑70 (MQ=255)
                            gcgAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAat                                           <  1:38205/70‑1 (MQ=255)
                              gggTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTg                                              <  1:2023080/63‑1 (MQ=255)
                              gggTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAatga                                         <  1:548856/68‑1 (MQ=255)
                               ggTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAatgatg                                       <  1:521866/70‑1 (MQ=255)
                                 tATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGc                                                                 <  1:1164611/43‑1 (MQ=255)
                                   tttAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTTAatg                                          <  1:1369606/64‑1 (MQ=255)
                                   tttAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAatg                                          <  1:292223/64‑1 (MQ=255)
                                     tAAAAAATGCACCGGGGCCAGCCCTAGCGAGTTTCGTGCCGGTTGTGAAGaaaaa                                                 >  1:1619605/1‑55 (MQ=255)
                                     tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGaaaaa                                                 >  1:2358113/1‑55 (MQ=255)
                                     tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGaaaaa                                                 >  1:555685/1‑55 (MQ=255)
                                     tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAatgatg                                       >  1:239703/1‑65 (MQ=255)
                                     tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGAGAAGAAAAAGTGAATGATGTAGCCg                                 >  1:1990582/1‑71 (MQ=255)
                                     tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAg                                                >  1:912599/1‑56 (MQ=255)
                                     tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCg                                 >  1:1647407/1‑71 (MQ=255)
                                            tGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGTTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGtt                          <  1:1782146/71‑1 (MQ=255)
                                               aCCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTc                       <  1:104669/71‑1 (MQ=255)
                                                ccGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTgaaga                                                     <  1:745005/40‑1 (MQ=255)
                                                 cGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCa                      >  1:2212052/1‑70 (MQ=255)
                                                 cGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCAt                     <  1:2620203/71‑1 (MQ=255)
                                                 cGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCAt                     <  1:1139640/71‑1 (MQ=255)
                                                 cGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCAt                     <  1:1422682/71‑1 (MQ=255)
                                                  ggggCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCAt                     >  1:1950072/1‑70 (MQ=255)
                                                   gggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCaa                             <  1:2060994/61‑1 (MQ=255)
                                                     gCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag                 >  1:1667806‑M1/1‑69 (MQ=255)
                                                     gCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag                 >  1:82884‑M1/1‑69 (MQ=255)
                                                           ccGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAAc           >  1:1518470/1‑71 (MQ=255)
                                                           ccGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAAc           >  1:706611/1‑71 (MQ=255)
                                                            cgagcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAAc           >  1:1664747/1‑70 (MQ=255)
                                                             gagcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGa         <  1:958610/71‑1 (MQ=255)
                                                               gcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaag       >  1:2010195‑M1/1‑59 (MQ=255)
                                                                  agTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAg    <  1:247740/71‑1 (MQ=255)
                                                                   gTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGa   >  1:267991/1‑71 (MQ=255)
                                                                    tttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc  <  1:1825901/71‑1 (MQ=255)
                                                                      |                                                                    
TTGGTTTTGACGATCAACTCTATTTCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAC  >  W3110S.gb/71144‑71282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: