| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 1,301,041 | Δ1,336 bp | 100% | insC–insD | insC, insD | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 1301041–1302370 | 1302376 | 7–1336 | 31 [0] | [0] 33 | insC–insD | insC,insD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1301040 | 0 (0.000) | 11 (0.670) | 8/88 | NT | 100% | intergenic (+218/‑90) | ychE/insC | predicted inner membrane protein/IS2 element protein |
| ? | W3110S.gb | 1302377 = | 0 (0.000) | intergenic (+19/‑519) | insD/oppA | IS2 element protein/oligopeptide transporter subunit | |||||
TCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/1300980‑1301040‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatattaTTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATT > W3110S.gb/1302377‑1302442 TCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAA > 1:1486145/1‑65 ATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCA > 1:674690/1‑63 ATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCA > 1:1477675/1‑63 ATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGA > 1:1430651/1‑69 TCATAATCCTGGGCTTGCTGAATAATAATTGAAATGATATTA < 1:360169/42‑1 TCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT < 1:1076574/44‑1 TCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT < 1:927609/44‑1 TCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT < 1:1288448/44‑1 TCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT < 1:1402690/44‑1 TCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT < 1:323405/44‑1 TCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT < 1:1791708/44‑1 TCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA < 1:1373097/42‑1 TCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA < 1:335966/42‑1 ATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACT > 1:1240651/1‑51 ATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAA > 1:969166/1‑44 ATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAA > 1:1431326/1‑44 TAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTC < 1:887220/46‑1 TAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT < 1:1709538/41‑1 CTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAAT < 1:727040/71‑1 TGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG < 1:370466/64‑1 GGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCT > 1:297981/1‑64 GGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCT > 1:786601/1‑64 TAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAA > 1:286958/1‑71 TAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAA > 1:712240/1‑71 ATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCA < 1:245840/70‑1 ATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCA < 1:1438753/70‑1 ATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCA < 1:1098185/70‑1 TATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATT > 1:1603166/1‑71 TATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATT > 1:1244682/1‑71 TATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATT > 1:1222441/1‑71 TTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTAT < 1:387146/61‑1 TCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/1300980‑1301040‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatattaTTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATT > W3110S.gb/1302377‑1302442 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |