| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 3,742,938 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 3742938–3744266 | 3744273 | 8–1336 | 25 [0] | [0] 25 | insD–insC | insD,insC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3742937 | 0 (0.000) | 24 (1.500) | 9/86 | NT | 100% | intergenic (‑123/+9) | yieE/insD | predicted phosphopantetheinyl transferase/IS2 element protein |
| ? | W3110S.gb | 3744274 = | 0 (0.000) | intergenic (‑100/+21) | insC/yidZ | IS2 element protein/predicted DNA‑binding transcriptional regulator | |||||
ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3742861‑3742937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTT > W3110S.gb/3744274‑3744329 ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGA < 1:376969/71‑1ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGA < 1:1371501/71‑1 TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAA < 1:680444/71‑1 TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAA < 1:1354266/71‑1 GACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAAT > 1:897916/1‑71 GACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAAT < 1:693639/71‑1 GACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAAT < 1:1701069/71‑1 ACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATT < 1:6137/71‑1 ACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATT < 1:393782/71‑1 ACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATT < 1:297901/71‑1 ACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATT < 1:284592/71‑1 ACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATT < 1:1353755/71‑1 ACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATT < 1:1496219/71‑1 AGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATT < 1:1018790/62‑1 AAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:1082849/1‑71 AAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:1224924/1‑71 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC < 1:814368/71‑1 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC < 1:1109283/71‑1 AAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:1580790/1‑70 AAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:1616424/1‑70 AAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:745725/1‑70 AAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:1106683/1‑70 GATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT < 1:1478506/71‑1 GATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT < 1:232253/71‑1 GATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT < 1:1169523/71‑1 GATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT < 1:612964/71‑1 GATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT < 1:6738/71‑1 CAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAA < 1:683414/37‑1 AAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATC < 1:126716/71‑1 CTTATTACAAC‑TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT < 1:570319/59‑1 ACAAC‑TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTA > 1:901189/1‑70 C‑TTTTTTACATTTTGTTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGT < 1:773931/71‑1 C‑TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGT < 1:1708037/71‑1 C‑TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGT < 1:863849/71‑1 TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGT < 1:1792870/70‑1 TTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT < 1:1288533/47‑1 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA > 1:194812/1‑48 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA > 1:834278/1‑35 TTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTT > 1:1200453/1‑71 GGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTT < 1:1385836/57‑1 ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAAC‑TTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3742861‑3742937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTT > W3110S.gb/3744274‑3744329 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |