| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 23 (1.210) | 21 (1.530) +AGGGTCCCTAAGTC |
13/74 | NT | 70.0% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 2 (0.110) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
AGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCA > W3110S.gb/71200‑71335 | aGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGt < 1:638902/71‑1 (MQ=255)aGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGt < 1:882840/71‑1 (MQ=255)aGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGt < 1:1828008/71‑1 (MQ=255)aGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGt < 1:1252641/71‑1 (MQ=255)aGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGt < 1:400099/71‑1 (MQ=255)aGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa > 1:198815‑M1/1‑66 (MQ=255) agcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa < 1:786733‑M1/71‑12 (MQ=255) cgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:1584433‑M1/1‑58 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaa > 1:757940‑M1/2‑52 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtcta > 1:796367‑M1/2‑52 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:901367‑M1/2‑52 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:1573440‑M1/2‑52 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:426178‑M1/71‑22 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:1355499‑M1/71‑23 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:1254462‑M1/71‑23 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:1786593‑M1/71‑23 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga > 1:1540665‑M1/1‑47 (MQ=255) cGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaag < 1:150850‑M1/71‑26 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:565579‑M1/65‑22 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:503951‑M1/65‑22 (MQ=255) ttGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcc < 1:1502922‑M1/71‑29 (MQ=255) ttGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcc < 1:1771255‑M1/71‑29 (MQ=255) tgtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaa > 1:728690‑M1/1‑42 (MQ=255) tgtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt > 1:250911‑M1/1‑42 (MQ=255) tgtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt > 1:254129‑M1/1‑42 (MQ=255) tgtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt > 1:1182720‑M1/1‑42 (MQ=255) tgtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt > 1:399848‑M1/1‑42 (MQ=255) tgtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt > 1:1411390‑M1/1‑42 (MQ=255) tgtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt > 1:1710138‑M1/1‑42 (MQ=255) tgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:189977‑M1/49‑10 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt > 1:1244414‑M1/1‑36 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGa < 1:1442647/71‑1 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGa < 1:1203930/71‑1 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGa < 1:1547182/71‑1 (MQ=255) tGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:291867‑M1/51‑23 (MQ=255) tgatgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgac > 1:62237‑M1/1‑25 (MQ=255) tAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACaa > 1:733402/1‑39 (MQ=255) tAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACaa > 1:981427/1‑39 (MQ=255) gCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGttt > 1:456004/1‑67 (MQ=255) gCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTg > 1:199867/1‑68 (MQ=255) gCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTg > 1:1728655/1‑68 (MQ=255) gCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTg > 1:402925/1‑68 (MQ=255) gCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTg > 1:1669283/1‑68 (MQ=255) gCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTg > 1:609449/1‑68 (MQ=255) ccGTCAAGTTGTCATAATTGGTAACGAATCAGACaa < 1:1035991/36‑1 (MQ=255) ccGTCAAGTTGTCATAATTGGTAACGAATCAGACaa < 1:1817581/36‑1 (MQ=255) ccGTCAAGTTGTCATAATTGGTAACGAATCAGACaa < 1:761963/36‑1 (MQ=255) ccGTCAAGTTGTCATAATTGGTAACGAATCAGACaa < 1:1176548/36‑1 (MQ=255) ccGTCAAGTTGTCATAATTGGTAACGAATCAGACaa < 1:1446565/36‑1 (MQ=255) ccGTCAAGTTGTCATAATTGGTAACGAATCAGACaa < 1:1448609/36‑1 (MQ=255) cGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgtttt < 1:1032037‑M1/71‑56 (MQ=255) gTCAAGTTGTCATAATTGGTAACGAATCAGACAAtt > 1:1627195/1‑36 (MQ=255) gTCAAGTTGTCATAATTGGTAACGAATCAGACAAta > 1:1720955/1‑35 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:734672‑M1/51‑38 (MQ=255) tCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGa < 1:307408/49‑1 (MQ=255) cAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttat < 1:758868‑M1/70‑58 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttattt > 1:1554190‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttattt > 1:458744‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttattt > 1:1073734‑M1/1‑12 (MQ=255) gTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGa < 1:219813/45‑1 (MQ=255) ttGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgac > 1:884123‑M1/1‑9 (MQ=255) gTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCtt > 1:1510857/1‑71 (MQ=255) gTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCtt > 1:900237/1‑71 (MQ=255) aTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCa < 1:1113470/71‑1 (MQ=255) aTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCa < 1:1035270/71‑1 (MQ=255) | AGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCA > W3110S.gb/71200‑71335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |