| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 14 (0.740) | 13 (0.710) +TC |
10/98 | NT | 65.9% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
TTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314386‑314521 | gatggaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCtt > 1:390330‑M1/68‑71 (MQ=255) tGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTa > 1:480865/1‑71 (MQ=255) tggaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTAc > 1:682777‑M1/66‑71 (MQ=255) aGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGc < 1:1064242/71‑1 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgagtcccgggatcactgaTCTTACCCAGCa > 1:607754‑M1/57‑68 (MQ=255) ttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTg > 1:1078924‑M1/53‑70 (MQ=255) ttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTg > 1:254391‑M1/53‑70 (MQ=255) taccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGac > 1:1442464‑M1/50‑70 (MQ=255) gtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACAcgcg < 1:73901‑M1/26‑1 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACAggcggc < 1:1615352‑M1/28‑1 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGc < 1:1210801‑M1/28‑1 (MQ=255) cccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCt < 1:1714165/71‑1 (MQ=255) cccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCt < 1:1783320/71‑1 (MQ=255) cccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTCGACACGCGGc > 1:108234/1‑70 (MQ=255) cgctgacttcccacttttcagcgaggcccgggatcactgaTc < 1:1790666‑M1/2‑1 (MQ=255) cgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCt > 1:352483‑M1/41‑69 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGa > 1:1560435/1‑54 (MQ=255) tcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:680219‑M1/38‑1 (MQ=255) tcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:35953‑M1/38‑1 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGc < 1:715969/42‑1 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGc < 1:348262/42‑1 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGc < 1:907028/42‑1 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGc < 1:801206/42‑1 (MQ=255) ttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGt < 1:751810‑M1/17‑1 (MQ=255) gaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:332754‑M1/53‑1 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:1609451/1‑71 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:578289/1‑71 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:567427/1‑71 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:501962/1‑71 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:539762/1‑71 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:452931‑M1/4‑54 (MQ=255) gaTCTTACCCAGCAATAGTGGTCACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:1831425‑M1/53‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:459653‑M1/3‑40 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:1350261‑M1/53‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa < 1:845996‑M1/68‑1 (MQ=255) ccTCTTACCCAGCAATAGTGGACACGCGGGTAAGTGAGTAAACTCtcagtcag > 1:1274068/1‑53 (MQ=255) ccTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:1790954/1‑53 (MQ=33) ccTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:226062/1‑53 (MQ=33) ccTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:1189791/1‑53 (MQ=33) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:833986‑M1/44‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:1545648‑M1/44‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:1319724‑M1/44‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:1226520‑M1/44‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:282493‑M1/2‑49 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:423565‑M1/2‑49 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:735431‑M1/2‑56 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:320361‑M1/2‑56 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:1193213‑M1/69‑1 (MQ=255) aTCTTACCAAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:961263‑M1/69‑1 (MQ=255) aTCATACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:1713772‑M1/44‑1 (MQ=255) | TTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314386‑314521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |