New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	2172308 =	NA (NA)	40 (2.150)	17/100	NT	100%	pseudogene (1563/2041 nt)	gatR	DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
	?	W3110S.gb	= 3920281	0 (0.000)					coding (88/213 nt)	cspA	major cold shock protein

GATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG  >  W3110S.gb/2172238‑2172363                                                                       |                                                        gATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGTATTGTCGTACTTCCGCTGTCGAGAATAACGGTCt                                                         >  1:208878/1‑71 (MQ=255)                   tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCt                                                    >  1:671097/1‑58 (MQ=255)                    aaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGt                                      >  1:1107309/1‑71 (MQ=255)                    aaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGt                                      >  1:299488/1‑71 (MQ=255)                          tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGaca                                 >  1:554624/1‑70 (MQ=255)                            ggCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACAcgc                              >  1:1479/1‑71 (MQ=255)                            ggCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAACCAGCAATAGTGGACAcgc                              >  1:460360/1‑71 (MQ=255)                                aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa                                          <  1:1572289/55‑1 (MQ=255)                                 tAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTa                         <  1:1471985/71‑1 (MQ=255)                                            gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc              >  1:1338684/1‑71 (MQ=255)                                               cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct           >  1:160442/1‑71 (MQ=255)                                                 tCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGaca                                 >  1:1146201/1‑47 (MQ=255)                                                 tCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGaca                                 >  1:1661848/1‑47 (MQ=255)                                                        tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag    <  1:546033/69‑1 (MQ=255)                                                        tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag    <  1:581124/69‑1 (MQ=255)                                                          gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag  >  1:708645/1‑69 (MQ=255)                                                          gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag  >  1:941896/1‑69 (MQ=255)                                                                       |                                                        GATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG  >  W3110S.gb/2172238‑2172363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.